Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00020

Experiment: R2A with Paraquat dichloride 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Paraquat dichloride 0.001 mg/ml
1,630	+		CA265_RS00010	0.12	-0.2
1,631	-		CA265_RS00010	0.12	-1.5
1,640	-		CA265_RS00010	0.14	-1.0
1,652	+		CA265_RS00010	0.16	+0.0
1,666	+		CA265_RS00010	0.18	-0.4
1,668	+		CA265_RS00010	0.19	+0.1
1,668	+		CA265_RS00010	0.19	-0.2
1,668	+		CA265_RS00010	0.19	-0.9
1,686	-		CA265_RS00010	0.22	+0.7
1,700	+		CA265_RS00010	0.25	+0.3
1,701	-		CA265_RS00010	0.25	-1.1
1,723	+		CA265_RS00010	0.29	+0.1
1,741	-		CA265_RS00010	0.32	+0.6
1,792	+		CA265_RS00010	0.41	+0.4
1,877	+		CA265_RS00010	0.57	+0.9
1,877	+		CA265_RS00010	0.57	+0.8
1,958	+		CA265_RS00010	0.72	+2.1
1,991	+		CA265_RS00010	0.78	-0.4
1,998	+		CA265_RS00010	0.79	+0.3
1,998	+		CA265_RS00010	0.79	+0.1
1,999	-		CA265_RS00010	0.79	+0.3
2,018	-		CA265_RS00010	0.83	-0.6
2,032	+		CA265_RS00010	0.85	-0.8
2,081	-				+1.5
2,119	+				-0.2
2,147	-				-0.1
2,163	+				-1.4
2,164	-				-1.8
2,164	-				-0.8
2,205	-		CA265_RS00015	0.13	-0.6
2,229	+		CA265_RS00015	0.19	-0.8
2,233	+		CA265_RS00015	0.21	-1.9
2,233	+		CA265_RS00015	0.21	-0.4
2,234	-		CA265_RS00015	0.21	-0.5
2,282	+		CA265_RS00015	0.33	-3.3
2,282	+		CA265_RS00015	0.33	-0.8
2,296	-		CA265_RS00015	0.37	+0.3
2,299	-		CA265_RS00015	0.37	+0.2
2,458	+		CA265_RS00015	0.78	-0.8
2,482	+		CA265_RS00015	0.84	-0.5
2,482	+		CA265_RS00015	0.84	-0.4
2,538	+				-1.2
2,539	-				-0.7
2,594	-				-1.4
2,601	-				-0.5
2,605	+				+0.7
2,605	+				-0.3
2,803	-		CA265_RS00020	0.23	-0.1
2,829	-		CA265_RS00020	0.26	-1.6
2,834	+		CA265_RS00020	0.27	-0.9
2,864	+		CA265_RS00020	0.30	+0.2
2,865	-		CA265_RS00020	0.31	-1.1
2,876	+		CA265_RS00020	0.32	-0.2
3,008	+		CA265_RS00020	0.49	-1.2
3,009	-		CA265_RS00020	0.49	-0.8
3,041	+		CA265_RS00020	0.53	-0.2
3,042	-		CA265_RS00020	0.53	-1.1
3,117	-		CA265_RS00020	0.63	-0.3
3,175	+		CA265_RS00020	0.71	-0.3
3,185	+		CA265_RS00020	0.72	-0.8
3,185	+		CA265_RS00020	0.72	-0.4
3,260	+		CA265_RS00020	0.82	-0.0
3,260	+		CA265_RS00020	0.82	+1.8
3,291	+		CA265_RS00020	0.86	-0.4
3,294	+		CA265_RS00020	0.86	-0.3
3,294	+		CA265_RS00020	0.86	-0.4
3,299	+		CA265_RS00020	0.87	-0.8
3,364	-				-1.4
3,406	+				+0.7
3,407	-				-0.5
3,417	+				-1.3
3,418	-				-0.3
3,418	-				+0.0
3,572	+		CA265_RS00025	0.38	+1.5
3,572	+		CA265_RS00025	0.38	-0.7
3,597	+		CA265_RS00025	0.43	+0.5
3,758	+		CA265_RS00025	0.80	-0.1
3,759	-		CA265_RS00025	0.80	-1.7
3,767	+		CA265_RS00025	0.82	+1.3
3,848	+				-1.7
3,848	+				-0.8
3,848	+				-0.9
3,849	-				-1.8
3,854	+				+1.3
3,854	+				+0.5
3,857	+				-0.1
3,858	-				-3.7
3,858	-				-1.5
3,861	+				-0.3
3,880	+				-0.3
3,881	-				+0.1
3,891	+				+0.4
3,892	-				+1.5
3,912	-				+0.3
3,913	+				-0.4
3,914	-				-0.2
3,914	-				+0.1
3,914	-				-0.0
3,914	-				+0.5
3,987	+				-0.9
3,988	-				-2.9
4,111	+		CA265_RS00030	0.31	-0.9
4,150	+		CA265_RS00030	0.38	-1.3
4,180	+		CA265_RS00030	0.43	+0.5
4,306	+		CA265_RS00030	0.64	-1.7
4,340	-		CA265_RS00030	0.70	-0.8