Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33630

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS33620 and BPHYT_RS33625 are separated by 97 nucleotidesBPHYT_RS33625 and BPHYT_RS33630 overlap by 4 nucleotidesBPHYT_RS33630 and BPHYT_RS33635 are separated by 58 nucleotides BPHYT_RS33620: BPHYT_RS33620 - transcriptional regulator, at 3,128,632 to 3,129,549 _RS33620 BPHYT_RS33625: BPHYT_RS33625 - chromate transporter, at 3,129,647 to 3,130,216 _RS33625 BPHYT_RS33630: BPHYT_RS33630 - chromate transporter, at 3,130,213 to 3,130,743 _RS33630 BPHYT_RS33635: BPHYT_RS33635 - AMP nucleosidase, at 3,130,802 to 3,132,328 _RS33635 Position (kb) 3130 3131Strain fitness (log2 ratio) -2 -1 0 1at 3129.344 kb on + strand, within BPHYT_RS33620at 3129.345 kb on - strand, within BPHYT_RS33620at 3129.345 kb on - strand, within BPHYT_RS33620at 3129.561 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.183 kb on + strandat 3130.184 kb on - strandat 3130.190 kb on + strandat 3130.190 kb on + strandat 3130.190 kb on + strandat 3130.191 kb on - strandat 3130.191 kb on - strandat 3130.243 kb on - strandat 3130.284 kb on + strand, within BPHYT_RS33630at 3130.285 kb on - strand, within BPHYT_RS33630at 3130.803 kb on + strandat 3130.804 kb on - strandat 3130.875 kb on - strandat 3131.001 kb on + strand, within BPHYT_RS33635at 3131.002 kb on - strand, within BPHYT_RS33635at 3131.310 kb on + strand, within BPHYT_RS33635at 3131.311 kb on - strand, within BPHYT_RS33635at 3131.476 kb on - strand, within BPHYT_RS33635at 3131.544 kb on + strand, within BPHYT_RS33635at 3131.545 kb on - strand, within BPHYT_RS33635at 3131.545 kb on - strand, within BPHYT_RS33635at 3131.581 kb on - strand, within BPHYT_RS33635at 3131.659 kb on + strand, within BPHYT_RS33635at 3131.662 kb on - strand, within BPHYT_RS33635at 3131.670 kb on + strand, within BPHYT_RS33635at 3131.670 kb on + strand, within BPHYT_RS33635at 3131.679 kb on + strand, within BPHYT_RS33635at 3131.679 kb on + strand, within BPHYT_RS33635at 3131.680 kb on - strand, within BPHYT_RS33635at 3131.688 kb on + strand, within BPHYT_RS33635at 3131.722 kb on - strand, within BPHYT_RS33635at 3131.722 kb on - strand, within BPHYT_RS33635

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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3,129,344 + BPHYT_RS33620 0.78 -0.0
3,129,345 - BPHYT_RS33620 0.78 -1.2
3,129,345 - BPHYT_RS33620 0.78 -0.0
3,129,561 + +0.9
3,130,183 + -0.4
3,130,183 + -0.9
3,130,183 + -0.9
3,130,183 + -0.0
3,130,184 - -0.1
3,130,190 + -0.2
3,130,190 + +0.2
3,130,190 + -0.5
3,130,191 - -0.5
3,130,191 - +0.3
3,130,243 - +1.6
3,130,284 + BPHYT_RS33630 0.13 -0.7
3,130,285 - BPHYT_RS33630 0.14 -1.8
3,130,803 + +0.6
3,130,804 - -0.5
3,130,875 - +0.1
3,131,001 + BPHYT_RS33635 0.13 -0.6
3,131,002 - BPHYT_RS33635 0.13 +0.0
3,131,310 + BPHYT_RS33635 0.33 -0.1
3,131,311 - BPHYT_RS33635 0.33 -0.3
3,131,476 - BPHYT_RS33635 0.44 +0.6
3,131,544 + BPHYT_RS33635 0.49 +1.2
3,131,545 - BPHYT_RS33635 0.49 +0.8
3,131,545 - BPHYT_RS33635 0.49 -0.5
3,131,581 - BPHYT_RS33635 0.51 -0.7
3,131,659 + BPHYT_RS33635 0.56 -0.1
3,131,662 - BPHYT_RS33635 0.56 -0.1
3,131,670 + BPHYT_RS33635 0.57 -0.1
3,131,670 + BPHYT_RS33635 0.57 -0.2
3,131,679 + BPHYT_RS33635 0.57 -0.1
3,131,679 + BPHYT_RS33635 0.57 -0.1
3,131,680 - BPHYT_RS33635 0.57 -0.4
3,131,688 + BPHYT_RS33635 0.58 +0.1
3,131,722 - BPHYT_RS33635 0.60 -0.4
3,131,722 - BPHYT_RS33635 0.60 -0.0

Or see this region's nucleotide sequence