Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32815

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32810 and BPHYT_RS32815 overlap by 4 nucleotidesBPHYT_RS32815 and BPHYT_RS32820 are separated by 79 nucleotides BPHYT_RS32810: BPHYT_RS32810 - xylose ABC transporter permease, at 2,941,105 to 2,942,304 _RS32810 BPHYT_RS32815: BPHYT_RS32815 - sugar ABC transporter, at 2,942,301 to 2,943,860 _RS32815 BPHYT_RS32820: BPHYT_RS32820 - xylose ABC transporter substrate-binding protein, at 2,943,940 to 2,944,968 _RS32820 Position (kb) 2942 2943 2944Strain fitness (log2 ratio) -1 0 1at 2941.485 kb on - strand, within BPHYT_RS32810at 2941.488 kb on + strand, within BPHYT_RS32810at 2942.289 kb on + strandat 2942.696 kb on + strand, within BPHYT_RS32815at 2943.425 kb on - strand, within BPHYT_RS32815at 2943.425 kb on - strand, within BPHYT_RS32815at 2943.508 kb on + strand, within BPHYT_RS32815at 2944.071 kb on + strand, within BPHYT_RS32820

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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2,941,485 - BPHYT_RS32810 0.32 +0.2
2,941,488 + BPHYT_RS32810 0.32 -0.1
2,942,289 + +0.1
2,942,696 + BPHYT_RS32815 0.25 -0.2
2,943,425 - BPHYT_RS32815 0.72 +0.1
2,943,425 - BPHYT_RS32815 0.72 +0.2
2,943,508 + BPHYT_RS32815 0.77 -0.6
2,944,071 + BPHYT_RS32820 0.13 -0.4

Or see this region's nucleotide sequence