Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25955

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25950 and BPHYT_RS25955 overlap by 1 nucleotidesBPHYT_RS25955 and BPHYT_RS25960 are separated by 136 nucleotides BPHYT_RS25950: BPHYT_RS25950 - sensor histidine kinase, at 1,397,346 to 1,398,806 _RS25950 BPHYT_RS25955: BPHYT_RS25955 - transcriptional regulator, at 1,398,806 to 1,399,483 _RS25955 BPHYT_RS25960: BPHYT_RS25960 - ABC transporter, at 1,399,620 to 1,400,534 _RS25960 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -2 -1 0 1at 1398.719 kb on - strandat 1398.719 kb on - strandat 1398.957 kb on + strandat 1398.958 kb on - strand, within BPHYT_RS25955at 1399.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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1,398,719 - -1.8
1,398,719 - -0.3
1,398,957 + +1.4
1,398,958 - BPHYT_RS25955 0.22 -1.1
1,399,622 - +0.1

Or see this region's nucleotide sequence