Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22145

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22140 and BPHYT_RS22145 are separated by 146 nucleotidesBPHYT_RS22145 and BPHYT_RS22150 overlap by 4 nucleotides BPHYT_RS22140: BPHYT_RS22140 - hypothetical protein, at 527,467 to 528,807 _RS22140 BPHYT_RS22145: BPHYT_RS22145 - phosphoesterase, at 528,954 to 529,613 _RS22145 BPHYT_RS22150: BPHYT_RS22150 - DEAD/DEAH box helicase, at 529,610 to 532,255 _RS22150 Position (kb) 528 529 530Strain fitness (log2 ratio) -1 0 1 2at 529.225 kb on + strand, within BPHYT_RS22145at 529.226 kb on - strand, within BPHYT_RS22145at 529.817 kb on + strandat 529.818 kb on - strandat 530.337 kb on + strand, within BPHYT_RS22150at 530.337 kb on + strand, within BPHYT_RS22150at 530.583 kb on + strand, within BPHYT_RS22150

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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529,225 + BPHYT_RS22145 0.41 -0.9
529,226 - BPHYT_RS22145 0.41 -0.0
529,817 + +0.3
529,818 - +2.1
530,337 + BPHYT_RS22150 0.27 +0.6
530,337 + BPHYT_RS22150 0.27 +1.3
530,583 + BPHYT_RS22150 0.37 +0.0

Or see this region's nucleotide sequence