Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21940

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21930 and BPHYT_RS21935 are separated by 81 nucleotidesBPHYT_RS21935 and BPHYT_RS21940 are separated by 165 nucleotidesBPHYT_RS21940 and BPHYT_RS21945 are separated by 7 nucleotides BPHYT_RS21930: BPHYT_RS21930 - MarR family transcriptional regulator, at 477,266 to 477,688 _RS21930 BPHYT_RS21935: BPHYT_RS21935 - MarR family transcriptional regulator, at 477,770 to 478,192 _RS21935 BPHYT_RS21940: BPHYT_RS21940 - hemolysin D, at 478,358 to 479,383 _RS21940 BPHYT_RS21945: BPHYT_RS21945 - DSBA oxidoreductase, at 479,391 to 480,962 _RS21945 Position (kb) 478 479 480Strain fitness (log2 ratio) -2 -1 0 1 2at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.836 kb on + strand, within BPHYT_RS21935at 478.274 kb on - strandat 478.292 kb on - strandat 478.455 kb on - strandat 478.745 kb on + strand, within BPHYT_RS21940at 478.961 kb on + strand, within BPHYT_RS21940at 478.992 kb on - strand, within BPHYT_RS21940at 479.964 kb on + strand, within BPHYT_RS21945at 479.964 kb on + strand, within BPHYT_RS21945at 479.965 kb on - strand, within BPHYT_RS21945at 480.029 kb on + strand, within BPHYT_RS21945

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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477,835 - BPHYT_RS21935 0.15 +0.9
477,835 - BPHYT_RS21935 0.15 -0.3
477,835 - BPHYT_RS21935 0.15 -2.3
477,836 + BPHYT_RS21935 0.16 +0.3
478,274 - +2.3
478,292 - +0.0
478,455 - -0.2
478,745 + BPHYT_RS21940 0.38 -1.2
478,961 + BPHYT_RS21940 0.59 -0.6
478,992 - BPHYT_RS21940 0.62 -0.7
479,964 + BPHYT_RS21945 0.36 -0.0
479,964 + BPHYT_RS21945 0.36 -0.3
479,965 - BPHYT_RS21945 0.37 -0.6
480,029 + BPHYT_RS21945 0.41 -0.9

Or see this region's nucleotide sequence