Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13935

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13930 and BPHYT_RS13935 are separated by 391 nucleotidesBPHYT_RS13935 and BPHYT_RS13940 overlap by 4 nucleotidesBPHYT_RS13940 and BPHYT_RS13945 are separated by 160 nucleotides BPHYT_RS13930: BPHYT_RS13930 - hypothetical protein, at 3,180,966 to 3,183,323 _RS13930 BPHYT_RS13935: BPHYT_RS13935 - mannosyltransferase, at 3,183,715 to 3,184,428 _RS13935 BPHYT_RS13940: BPHYT_RS13940 - ABC transporter, at 3,184,425 to 3,185,177 _RS13940 BPHYT_RS13945: BPHYT_RS13945 - branched-chain amino acid ABC transporter permease, at 3,185,338 to 3,186,630 _RS13945 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -1 0 1at 3182.760 kb on + strand, within BPHYT_RS13930at 3182.761 kb on - strand, within BPHYT_RS13930at 3184.184 kb on + strand, within BPHYT_RS13935at 3184.676 kb on + strand, within BPHYT_RS13940at 3184.676 kb on + strand, within BPHYT_RS13940at 3184.729 kb on + strand, within BPHYT_RS13940at 3184.729 kb on + strand, within BPHYT_RS13940at 3184.730 kb on - strand, within BPHYT_RS13940at 3184.730 kb on - strand, within BPHYT_RS13940at 3185.155 kb on + strandat 3185.215 kb on + strandat 3185.215 kb on + strandat 3185.377 kb on + strandat 3185.377 kb on + strandat 3185.378 kb on - strandat 3185.378 kb on - strandat 3185.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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3,182,760 + BPHYT_RS13930 0.76 +1.0
3,182,761 - BPHYT_RS13930 0.76 +0.6
3,184,184 + BPHYT_RS13935 0.66 -0.8
3,184,676 + BPHYT_RS13940 0.33 -0.8
3,184,676 + BPHYT_RS13940 0.33 -0.5
3,184,729 + BPHYT_RS13940 0.40 -0.3
3,184,729 + BPHYT_RS13940 0.40 +0.4
3,184,730 - BPHYT_RS13940 0.41 -0.1
3,184,730 - BPHYT_RS13940 0.41 -0.1
3,185,155 + +0.2
3,185,215 + -0.7
3,185,215 + +0.1
3,185,377 + -0.5
3,185,377 + -0.7
3,185,378 - +0.3
3,185,378 - -0.6
3,185,412 - -0.8

Or see this region's nucleotide sequence