Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10740

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10730 and BPHYT_RS10735 are separated by 64 nucleotidesBPHYT_RS10735 and BPHYT_RS10740 are separated by 51 nucleotidesBPHYT_RS10740 and BPHYT_RS10745 are separated by 258 nucleotidesBPHYT_RS10745 and BPHYT_RS10750 are separated by 28 nucleotides BPHYT_RS10730: BPHYT_RS10730 - Glu-tRNA amidotransferase, at 2,441,167 to 2,442,291 _RS10730 BPHYT_RS10735: BPHYT_RS10735 - 3-oxoacyl-ACP reductase, at 2,442,356 to 2,443,099 _RS10735 BPHYT_RS10740: BPHYT_RS10740 - LuxR family transcriptional regulator, at 2,443,151 to 2,443,813 _RS10740 BPHYT_RS10745: BPHYT_RS10745 - FMN reductase, at 2,444,072 to 2,444,611 _RS10745 BPHYT_RS10750: BPHYT_RS10750 - LysR family transcriptional regulator, at 2,444,640 to 2,445,572 _RS10750 Position (kb) 2443 2444Strain fitness (log2 ratio) -1 0 1at 2443.407 kb on - strand, within BPHYT_RS10740at 2443.911 kb on - strandat 2444.735 kb on + strand, within BPHYT_RS10750

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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2,443,407 - BPHYT_RS10740 0.39 -1.1
2,443,911 - -0.6
2,444,735 + BPHYT_RS10750 0.10 +0.4

Or see this region's nucleotide sequence