Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04335

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04330 and BPHYT_RS04335 are separated by 53 nucleotidesBPHYT_RS04335 and BPHYT_RS04340 overlap by 4 nucleotides BPHYT_RS04330: BPHYT_RS04330 - hypothetical protein, at 997,214 to 998,356 _RS04330 BPHYT_RS04335: BPHYT_RS04335 - membrane protein, at 998,410 to 998,835 _RS04335 BPHYT_RS04340: BPHYT_RS04340 - hypothetical protein, at 998,832 to 1,000,115 _RS04340 Position (kb) 998 999Strain fitness (log2 ratio) -2 -1 0 1 2at 997.446 kb on - strand, within BPHYT_RS04330at 997.576 kb on + strand, within BPHYT_RS04330at 997.576 kb on + strand, within BPHYT_RS04330at 997.576 kb on + strand, within BPHYT_RS04330at 998.117 kb on + strand, within BPHYT_RS04330at 998.203 kb on + strand, within BPHYT_RS04330at 998.203 kb on + strand, within BPHYT_RS04330at 998.204 kb on - strand, within BPHYT_RS04330at 998.215 kb on - strand, within BPHYT_RS04330at 998.215 kb on - strand, within BPHYT_RS04330at 998.528 kb on + strand, within BPHYT_RS04335at 998.528 kb on + strand, within BPHYT_RS04335at 998.529 kb on - strand, within BPHYT_RS04335at 998.836 kb on - strandat 998.836 kb on - strandat 998.899 kb on + strandat 998.900 kb on - strandat 998.900 kb on - strandat 998.902 kb on + strandat 998.965 kb on + strand, within BPHYT_RS04340at 999.212 kb on + strand, within BPHYT_RS04340at 999.343 kb on + strand, within BPHYT_RS04340at 999.494 kb on + strand, within BPHYT_RS04340at 999.556 kb on + strand, within BPHYT_RS04340at 999.557 kb on - strand, within BPHYT_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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997,446 - BPHYT_RS04330 0.20 +0.9
997,576 + BPHYT_RS04330 0.32 +0.1
997,576 + BPHYT_RS04330 0.32 +1.2
997,576 + BPHYT_RS04330 0.32 -0.1
998,117 + BPHYT_RS04330 0.79 -0.4
998,203 + BPHYT_RS04330 0.87 +0.7
998,203 + BPHYT_RS04330 0.87 +0.4
998,204 - BPHYT_RS04330 0.87 -0.3
998,215 - BPHYT_RS04330 0.88 -1.0
998,215 - BPHYT_RS04330 0.88 +0.1
998,528 + BPHYT_RS04335 0.28 -0.1
998,528 + BPHYT_RS04335 0.28 -0.8
998,529 - BPHYT_RS04335 0.28 -1.8
998,836 - +0.2
998,836 - +0.1
998,899 + -0.7
998,900 - +0.6
998,900 - +1.8
998,902 + -0.2
998,965 + BPHYT_RS04340 0.10 -1.0
999,212 + BPHYT_RS04340 0.30 -1.1
999,343 + BPHYT_RS04340 0.40 +0.2
999,494 + BPHYT_RS04340 0.52 +0.1
999,556 + BPHYT_RS04340 0.56 +0.3
999,557 - BPHYT_RS04340 0.56 -0.0

Or see this region's nucleotide sequence