Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04010

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04005 and BPHYT_RS04010 are separated by 112 nucleotidesBPHYT_RS04010 and BPHYT_RS04015 are separated by 55 nucleotides BPHYT_RS04005: BPHYT_RS04005 - GDP-L-fucose synthase, at 912,412 to 913,371 _RS04005 BPHYT_RS04010: BPHYT_RS04010 - glycosyl transferase, at 913,484 to 914,626 _RS04010 BPHYT_RS04015: BPHYT_RS04015 - glycosyl transferase, at 914,682 to 916,034 _RS04015 Position (kb) 913 914 915Strain fitness (log2 ratio) -1 0 1at 912.655 kb on + strand, within BPHYT_RS04005at 912.932 kb on - strand, within BPHYT_RS04005at 913.463 kb on - strandat 914.307 kb on - strand, within BPHYT_RS04010at 914.740 kb on - strandat 914.740 kb on - strandat 915.092 kb on + strand, within BPHYT_RS04015

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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912,655 + BPHYT_RS04005 0.25 -0.4
912,932 - BPHYT_RS04005 0.54 -0.1
913,463 - -0.1
914,307 - BPHYT_RS04010 0.72 -0.9
914,740 - +0.1
914,740 - +0.1
915,092 + BPHYT_RS04015 0.30 +0.7

Or see this region's nucleotide sequence