Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03460 and BPHYT_RS03465 overlap by 4 nucleotides BPHYT_RS03465 and BPHYT_RS03470 are separated by 787 nucleotides
BPHYT_RS03460: BPHYT_RS03460 - mammalian cell entry protein, at 779,249 to 780,907
_RS03460
BPHYT_RS03465: BPHYT_RS03465 - hypothetical protein, at 780,904 to 781,650
_RS03465
BPHYT_RS03470: BPHYT_RS03470 - LysR family transcriptional regulator, at 782,438 to 783,397
_RS03470
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1 at 780.285 kb on - strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.473 kb on + strand, within BPHYT_RS03460 at 780.474 kb on - strand, within BPHYT_RS03460 at 780.487 kb on + strand, within BPHYT_RS03460 at 781.022 kb on - strand, within BPHYT_RS03465 at 781.023 kb on + strand, within BPHYT_RS03465 at 781.038 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.276 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.309 kb on + strand, within BPHYT_RS03465 at 781.443 kb on + strand, within BPHYT_RS03465 at 781.528 kb on - strand, within BPHYT_RS03465 at 781.707 kb on - strand at 781.890 kb on + strand at 782.082 kb on - strand at 782.082 kb on - strand at 782.212 kb on - strand at 782.212 kb on - strand at 782.258 kb on + strand at 782.258 kb on + strand at 782.289 kb on + strand at 782.388 kb on + strand at 782.394 kb on + strand at 782.397 kb on - strand at 782.400 kb on + strand at 782.400 kb on + strand at 782.459 kb on + strand at 782.459 kb on + strand at 782.460 kb on - strand at 782.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 780,285 - BPHYT_RS03460 0.62 +0.3 780,473 + BPHYT_RS03460 0.74 -0.3 780,473 + BPHYT_RS03460 0.74 -0.1 780,474 - BPHYT_RS03460 0.74 -0.2 780,487 + BPHYT_RS03460 0.75 -0.2 781,022 - BPHYT_RS03465 0.16 -0.1 781,023 + BPHYT_RS03465 0.16 -0.4 781,038 + BPHYT_RS03465 0.18 +0.7 781,276 + BPHYT_RS03465 0.50 -0.3 781,276 + BPHYT_RS03465 0.50 +0.1 781,309 + BPHYT_RS03465 0.54 -0.2 781,309 + BPHYT_RS03465 0.54 +0.1 781,309 + BPHYT_RS03465 0.54 +0.2 781,443 + BPHYT_RS03465 0.72 -0.3 781,528 - BPHYT_RS03465 0.84 -0.7 781,707 - +0.1 781,890 + -0.7 782,082 - +0.1 782,082 - -0.3 782,212 - -0.2 782,212 - +0.2 782,258 + -1.2 782,258 + -1.0 782,289 + -0.8 782,388 + +0.2 782,394 + +0.7 782,397 - -1.9 782,400 + +1.1 782,400 + +0.0 782,459 + +0.2 782,459 + +0.3 782,460 - +0.4 782,460 - +0.2
Or see this region's nucleotide sequence