Strain Fitness in Sinorhizobium meliloti 1021 around SMc04386

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc04385 and SMc04386 are separated by 16 nucleotidesSMc04386 and SMc04387 are separated by 188 nucleotidesSMc04387 and SMc04388 are separated by 145 nucleotides SMc04385: SMc04385 - L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data), at 3,586,114 to 3,587,646 SMc04385 SMc04386: SMc04386 - 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data), at 3,587,663 to 3,588,895 SMc04386 SMc04387: SMc04387 - aldehyde dehydrogenase, at 3,589,084 to 3,589,632 SMc04387 SMc04388: SMc04388 - beta alanine--pyruvate transaminase, at 3,589,778 to 3,591,115 SMc04388 Position (kb) 3587 3588 3589Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3587.077 kb on + strand, within SMc04385at 3587.243 kb on - strand, within SMc04385at 3587.245 kb on + strand, within SMc04385at 3587.246 kb on - strand, within SMc04385at 3587.320 kb on + strand, within SMc04385at 3587.566 kb on + strandat 3587.566 kb on + strandat 3587.568 kb on + strandat 3587.596 kb on + strandat 3587.883 kb on - strand, within SMc04386at 3588.063 kb on - strand, within SMc04386at 3588.091 kb on + strand, within SMc04386at 3588.234 kb on - strand, within SMc04386at 3588.309 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.413 kb on + strand, within SMc04386at 3588.414 kb on - strand, within SMc04386at 3588.665 kb on + strand, within SMc04386at 3588.750 kb on - strand, within SMc04386at 3588.750 kb on - strand, within SMc04386at 3588.824 kb on + strandat 3588.824 kb on + strandat 3588.976 kb on + strandat 3588.977 kb on - strandat 3589.102 kb on - strandat 3589.175 kb on + strand, within SMc04387at 3589.176 kb on - strand, within SMc04387at 3589.305 kb on - strand, within SMc04387at 3589.361 kb on + strand, within SMc04387at 3589.385 kb on + strand, within SMc04387at 3589.406 kb on + strand, within SMc04387at 3589.407 kb on - strand, within SMc04387at 3589.407 kb on - strand, within SMc04387at 3589.466 kb on - strand, within SMc04387at 3589.466 kb on - strand, within SMc04387at 3589.546 kb on - strandat 3589.633 kb on - strandat 3589.696 kb on - strandat 3589.821 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
3,587,077 + SMc04385 0.63 +3.5
3,587,243 - SMc04385 0.74 +4.3
3,587,245 + SMc04385 0.74 +4.6
3,587,246 - SMc04385 0.74 +5.6
3,587,320 + SMc04385 0.79 +4.2
3,587,566 + +4.4
3,587,566 + +3.4
3,587,568 + +3.5
3,587,596 + +3.7
3,587,883 - SMc04386 0.18 -0.6
3,588,063 - SMc04386 0.32 -0.5
3,588,091 + SMc04386 0.35 -0.8
3,588,234 - SMc04386 0.46 -0.1
3,588,309 + SMc04386 0.52 -0.3
3,588,311 + SMc04386 0.53 -0.9
3,588,311 + SMc04386 0.53 -0.7
3,588,311 + SMc04386 0.53 -0.1
3,588,312 - SMc04386 0.53 -0.2
3,588,312 - SMc04386 0.53 +0.4
3,588,312 - SMc04386 0.53 -0.8
3,588,312 - SMc04386 0.53 +0.2
3,588,312 - SMc04386 0.53 -1.4
3,588,413 + SMc04386 0.61 -1.4
3,588,414 - SMc04386 0.61 -0.1
3,588,665 + SMc04386 0.81 -0.4
3,588,750 - SMc04386 0.88 -0.5
3,588,750 - SMc04386 0.88 -1.0
3,588,824 + -0.9
3,588,824 + +0.3
3,588,976 + -0.9
3,588,977 - -0.7
3,589,102 - +0.3
3,589,175 + SMc04387 0.17 +0.6
3,589,176 - SMc04387 0.17 -0.3
3,589,305 - SMc04387 0.40 -0.3
3,589,361 + SMc04387 0.50 -0.3
3,589,385 + SMc04387 0.55 +0.6
3,589,406 + SMc04387 0.59 -2.5
3,589,407 - SMc04387 0.59 +0.1
3,589,407 - SMc04387 0.59 -0.7
3,589,466 - SMc04387 0.70 +0.5
3,589,466 - SMc04387 0.70 -0.3
3,589,546 - +2.4
3,589,633 - -0.7
3,589,696 - +0.1
3,589,821 - -0.2

Or see this region's nucleotide sequence