Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04293 and SMc04294 are separated by 41 nucleotides SMc04294 and SMc04295 overlap by 1 nucleotides SMc04295 and SMc04297 overlap by 20 nucleotides SMc04297 and SMc04301 overlap by 4 nucleotides
SMc04293: SMc04293 - peptide-binding periplasmic ABC transporter protein, at 2,110,798 to 2,112,414
SMc04293
SMc04294: SMc04294 - peptide transport system permease ABC transporter protein, at 2,112,456 to 2,113,376
SMc04294
SMc04295: SMc04295 - peptide transport system permease ABC transporter protein, at 2,113,376 to 2,114,272
SMc04295
SMc04297: SMc04297 - transcriptional regulator, at 2,114,253 to 2,114,867
SMc04297
SMc04301: SMc04301 - regulatory protein, at 2,114,864 to 2,116,030
SMc04301
Position (kb)
2113
2114
2115 Strain fitness (log2 ratio)
-2
-1
0
1 at 2112.400 kb on + strand at 2112.400 kb on + strand at 2112.400 kb on + strand at 2112.422 kb on + strand at 2112.694 kb on - strand, within SMc04294 at 2112.815 kb on - strand, within SMc04294 at 2112.919 kb on + strand, within SMc04294 at 2112.919 kb on + strand, within SMc04294 at 2112.919 kb on + strand, within SMc04294 at 2112.920 kb on - strand, within SMc04294 at 2112.986 kb on + strand, within SMc04294 at 2112.987 kb on - strand, within SMc04294 at 2113.135 kb on + strand, within SMc04294 at 2113.135 kb on + strand, within SMc04294 at 2113.174 kb on + strand, within SMc04294 at 2113.174 kb on + strand, within SMc04294 at 2113.183 kb on + strand, within SMc04294 at 2113.183 kb on + strand, within SMc04294 at 2113.366 kb on + strand at 2113.366 kb on + strand at 2113.366 kb on + strand at 2113.367 kb on - strand at 2113.367 kb on - strand at 2113.367 kb on - strand at 2113.503 kb on + strand, within SMc04295 at 2113.503 kb on + strand, within SMc04295 at 2113.503 kb on + strand, within SMc04295 at 2113.504 kb on - strand, within SMc04295 at 2113.504 kb on - strand, within SMc04295 at 2113.592 kb on + strand, within SMc04295 at 2113.592 kb on + strand, within SMc04295 at 2113.593 kb on - strand, within SMc04295 at 2113.743 kb on + strand, within SMc04295 at 2113.744 kb on - strand, within SMc04295 at 2113.911 kb on + strand, within SMc04295 at 2114.119 kb on - strand, within SMc04295 at 2114.368 kb on + strand, within SMc04297 at 2114.369 kb on - strand, within SMc04297 at 2114.525 kb on - strand, within SMc04297 at 2114.678 kb on + strand, within SMc04297 at 2114.679 kb on - strand, within SMc04297 at 2114.679 kb on - strand, within SMc04297 at 2114.852 kb on + strand at 2114.852 kb on + strand at 2114.853 kb on - strand at 2114.961 kb on + strand at 2114.962 kb on - strand at 2114.962 kb on - strand at 2114.962 kb on - strand at 2114.962 kb on - strand at 2115.101 kb on + strand, within SMc04301 at 2115.101 kb on + strand, within SMc04301 at 2115.102 kb on - strand, within SMc04301 at 2115.177 kb on + strand, within SMc04301 at 2115.177 kb on + strand, within SMc04301 at 2115.178 kb on - strand, within SMc04301 at 2115.264 kb on + strand, within SMc04301 at 2115.264 kb on + strand, within SMc04301 at 2115.264 kb on + strand, within SMc04301
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 2,112,400 + -2.2 2,112,400 + -0.6 2,112,400 + -0.3 2,112,422 + -0.2 2,112,694 - SMc04294 0.26 -0.4 2,112,815 - SMc04294 0.39 -0.7 2,112,919 + SMc04294 0.50 -0.1 2,112,919 + SMc04294 0.50 -1.9 2,112,919 + SMc04294 0.50 -0.5 2,112,920 - SMc04294 0.50 +0.1 2,112,986 + SMc04294 0.58 -0.4 2,112,987 - SMc04294 0.58 -0.7 2,113,135 + SMc04294 0.74 +0.1 2,113,135 + SMc04294 0.74 +0.7 2,113,174 + SMc04294 0.78 -0.1 2,113,174 + SMc04294 0.78 -0.7 2,113,183 + SMc04294 0.79 -0.1 2,113,183 + SMc04294 0.79 +0.1 2,113,366 + -0.4 2,113,366 + +0.2 2,113,366 + +0.5 2,113,367 - +0.3 2,113,367 - +0.4 2,113,367 - -0.2 2,113,503 + SMc04295 0.14 -0.1 2,113,503 + SMc04295 0.14 +0.1 2,113,503 + SMc04295 0.14 +1.6 2,113,504 - SMc04295 0.14 -0.2 2,113,504 - SMc04295 0.14 +1.0 2,113,592 + SMc04295 0.24 -1.6 2,113,592 + SMc04295 0.24 +0.5 2,113,593 - SMc04295 0.24 -0.5 2,113,743 + SMc04295 0.41 +0.1 2,113,744 - SMc04295 0.41 +0.6 2,113,911 + SMc04295 0.60 +0.9 2,114,119 - SMc04295 0.83 +0.2 2,114,368 + SMc04297 0.19 -0.7 2,114,369 - SMc04297 0.19 -0.3 2,114,525 - SMc04297 0.44 -0.3 2,114,678 + SMc04297 0.69 +0.7 2,114,679 - SMc04297 0.69 +0.5 2,114,679 - SMc04297 0.69 -1.8 2,114,852 + -0.8 2,114,852 + +0.3 2,114,853 - +0.4 2,114,961 + -0.3 2,114,962 - -0.0 2,114,962 - +1.3 2,114,962 - -0.2 2,114,962 - -0.1 2,115,101 + SMc04301 0.20 -0.1 2,115,101 + SMc04301 0.20 +1.0 2,115,102 - SMc04301 0.20 +1.0 2,115,177 + SMc04301 0.27 +0.2 2,115,177 + SMc04301 0.27 -0.0 2,115,178 - SMc04301 0.27 +0.5 2,115,264 + SMc04301 0.34 -0.7 2,115,264 + SMc04301 0.34 -0.0 2,115,264 + SMc04301 0.34 +0.4
Or see this region's nucleotide sequence