Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03892 and SMc03893 are separated by 231 nucleotides SMc03893 and SMc03894 overlap by 4 nucleotides SMc03894 and SMc03895 are separated by 14 nucleotides
SMc03892: SMc03892 - transposase, at 3,559,760 to 3,560,836
SMc03892
SMc03893: SMc03893 - amino-acid transport system permease ABC transporter protein, at 3,561,068 to 3,561,748
SMc03893
SMc03894: SMc03894 - amino-acid ABC transporter ATP-binding protein, at 3,561,745 to 3,562,506
SMc03894
SMc03895: SMc03895 - pyruvate carboxylase, at 3,562,521 to 3,565,979
SMc03895
Position (kb)
3561
3562 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 3560.818 kb on + strand at 3560.827 kb on + strand at 3560.827 kb on + strand at 3560.862 kb on - strand at 3561.009 kb on + strand at 3561.242 kb on + strand, within SMc03893 at 3561.242 kb on + strand, within SMc03893 at 3561.242 kb on + strand, within SMc03893 at 3561.242 kb on + strand, within SMc03893 at 3561.243 kb on - strand, within SMc03893 at 3561.243 kb on - strand, within SMc03893 at 3561.243 kb on - strand, within SMc03893 at 3561.296 kb on + strand, within SMc03893 at 3561.319 kb on - strand, within SMc03893 at 3561.374 kb on + strand, within SMc03893 at 3561.617 kb on + strand, within SMc03893 at 3561.617 kb on + strand, within SMc03893 at 3561.617 kb on + strand, within SMc03893 at 3561.618 kb on - strand, within SMc03893 at 3561.618 kb on - strand, within SMc03893 at 3561.635 kb on + strand, within SMc03893 at 3561.656 kb on + strand, within SMc03893 at 3561.656 kb on + strand, within SMc03893 at 3561.656 kb on + strand, within SMc03893 at 3561.656 kb on + strand, within SMc03893 at 3561.657 kb on - strand, within SMc03893 at 3561.657 kb on - strand, within SMc03893 at 3561.720 kb on - strand at 3562.495 kb on + strand at 3562.496 kb on - strand at 3562.496 kb on - strand at 3562.523 kb on - strand at 3562.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 3,560,818 + +2.8 3,560,827 + -0.1 3,560,827 + +0.9 3,560,862 - -0.9 3,561,009 + +0.4 3,561,242 + SMc03893 0.26 -0.7 3,561,242 + SMc03893 0.26 +0.2 3,561,242 + SMc03893 0.26 +0.4 3,561,242 + SMc03893 0.26 -0.4 3,561,243 - SMc03893 0.26 +0.3 3,561,243 - SMc03893 0.26 -0.6 3,561,243 - SMc03893 0.26 -0.7 3,561,296 + SMc03893 0.33 -0.4 3,561,319 - SMc03893 0.37 +0.3 3,561,374 + SMc03893 0.45 -0.1 3,561,617 + SMc03893 0.81 -2.0 3,561,617 + SMc03893 0.81 +0.3 3,561,617 + SMc03893 0.81 +0.2 3,561,618 - SMc03893 0.81 +0.3 3,561,618 - SMc03893 0.81 -0.5 3,561,635 + SMc03893 0.83 +6.9 3,561,656 + SMc03893 0.86 -1.4 3,561,656 + SMc03893 0.86 -0.0 3,561,656 + SMc03893 0.86 -0.3 3,561,656 + SMc03893 0.86 -0.9 3,561,657 - SMc03893 0.86 +1.9 3,561,657 - SMc03893 0.86 -0.3 3,561,720 - -0.1 3,562,495 + +1.2 3,562,496 - -1.1 3,562,496 - +0.3 3,562,523 - +0.1 3,562,576 - -0.1
Or see this region's nucleotide sequence