Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03788 and SMc03789 overlap by 4 nucleotides SMc03789 and SMc03790 overlap by 158 nucleotides SMc03790 and SMc03791 are separated by 169 nucleotides
SMc03788: SMc03788 - DNA polymerase III subunit alpha, at 3,452,510 to 3,455,860
SMc03788
SMc03789: SMc03789 - hypothetical protein, at 3,455,857 to 3,457,470
SMc03789
SMc03790: SMc03790 - hypothetical protein, at 3,457,313 to 3,458,266
SMc03790
SMc03791: SMc03791 - hypothetical protein, at 3,458,436 to 3,458,870
SMc03791
Position (kb)
3455
3456
3457
3458 Strain fitness (log2 ratio)
-1
0
1 at 3454.859 kb on - strand, within SMc03788 at 3454.914 kb on + strand, within SMc03788 at 3454.945 kb on - strand, within SMc03788 at 3454.945 kb on - strand, within SMc03788 at 3455.064 kb on + strand, within SMc03788 at 3455.271 kb on + strand, within SMc03788 at 3455.286 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.376 kb on + strand, within SMc03788 at 3455.377 kb on - strand, within SMc03788 at 3455.398 kb on - strand, within SMc03788 at 3455.771 kb on + strand at 3455.771 kb on + strand at 3455.772 kb on - strand at 3455.967 kb on - strand at 3456.410 kb on + strand, within SMc03789 at 3456.517 kb on + strand, within SMc03789 at 3456.518 kb on - strand, within SMc03789 at 3457.107 kb on + strand, within SMc03789 at 3457.108 kb on - strand, within SMc03789 at 3457.108 kb on - strand, within SMc03789 at 3457.251 kb on + strand, within SMc03789 at 3457.455 kb on + strand at 3457.863 kb on + strand, within SMc03790 at 3457.864 kb on - strand, within SMc03790 at 3457.885 kb on - strand at 3457.971 kb on + strand, within SMc03790 at 3457.971 kb on + strand, within SMc03790 at 3457.971 kb on + strand, within SMc03790 at 3458.410 kb on + strand at 3458.412 kb on + strand at 3458.413 kb on - strand at 3458.413 kb on - strand at 3458.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 3,454,859 - SMc03788 0.70 -0.5 3,454,914 + SMc03788 0.72 -0.2 3,454,945 - SMc03788 0.73 -0.3 3,454,945 - SMc03788 0.73 -1.2 3,455,064 + SMc03788 0.76 -0.4 3,455,271 + SMc03788 0.82 +1.1 3,455,286 + SMc03788 0.83 +0.7 3,455,376 + SMc03788 0.86 -0.6 3,455,376 + SMc03788 0.86 -1.3 3,455,376 + SMc03788 0.86 -0.9 3,455,377 - SMc03788 0.86 -0.5 3,455,398 - SMc03788 0.86 -1.2 3,455,771 + +1.1 3,455,771 + +0.0 3,455,772 - -1.2 3,455,967 - -0.4 3,456,410 + SMc03789 0.34 -0.6 3,456,517 + SMc03789 0.41 -0.9 3,456,518 - SMc03789 0.41 -0.3 3,457,107 + SMc03789 0.77 -0.9 3,457,108 - SMc03789 0.78 -0.1 3,457,108 - SMc03789 0.78 -1.0 3,457,251 + SMc03789 0.86 +0.6 3,457,455 + -1.6 3,457,863 + SMc03790 0.58 +0.1 3,457,864 - SMc03790 0.58 +0.4 3,457,885 - +1.4 3,457,971 + SMc03790 0.69 -0.2 3,457,971 + SMc03790 0.69 +0.2 3,457,971 + SMc03790 0.69 +1.4 3,458,410 + +0.1 3,458,412 + +0.4 3,458,413 - +0.4 3,458,413 - +0.3 3,458,413 - +0.0
Or see this region's nucleotide sequence