Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03004 and SMc03005 are separated by 25 nucleotides SMc03005 and SMc03006 are separated by 3 nucleotides SMc03006 and SMc03007 are separated by 20 nucleotides
SMc03004: SMc03004 - chemoreceptor (methyl-accepting chemotaxis protein), at 702,172 to 703,773
SMc03004
SMc03005: SMc03005 - hypothetical protein, at 703,799 to 704,092
SMc03005
SMc03006: SMc03006 - chemotaxis regulator protein, at 704,096 to 704,461
SMc03006
SMc03007: SMc03007 - chemotaxis protein (sensory transduction histidine kinase), at 704,482 to 706,758
SMc03007
Position (kb) 704
705 Strain fitness (log2 ratio) -1
0
1
2 at 703.443 kb on - strand, within SMc03004 at 703.452 kb on - strand, within SMc03004 at 703.694 kb on + strand at 703.695 kb on - strand at 703.775 kb on + strand at 703.776 kb on - strand at 703.776 kb on - strand at 704.225 kb on - strand, within SMc03006 at 704.488 kb on - strand at 704.488 kb on - strand at 705.019 kb on + strand, within SMc03007 at 705.019 kb on + strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.020 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.053 kb on - strand, within SMc03007 at 705.126 kb on + strand, within SMc03007 at 705.172 kb on + strand, within SMc03007 at 705.173 kb on - strand, within SMc03007 at 705.173 kb on - strand, within SMc03007
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 703,443 - SMc03004 0.79 -1.4 703,452 - SMc03004 0.80 +0.3 703,694 + -1.0 703,695 - +1.6 703,775 + -0.3 703,776 - +1.2 703,776 - -0.5 704,225 - SMc03006 0.35 -0.8 704,488 - -0.5 704,488 - +0.7 705,019 + SMc03007 0.24 -1.1 705,019 + SMc03007 0.24 +0.4 705,020 - SMc03007 0.24 +1.0 705,020 - SMc03007 0.24 -0.1 705,053 - SMc03007 0.25 +1.8 705,053 - SMc03007 0.25 +0.7 705,126 + SMc03007 0.28 -0.3 705,172 + SMc03007 0.30 +0.3 705,173 - SMc03007 0.30 -0.4 705,173 - SMc03007 0.30 -0.1
Or see this region's nucleotide sequence