Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02858 and SMc02859 are separated by 172 nucleotides SMc02859 and SMc02860 are separated by 4 nucleotides SMc02860 and SMc02861 are separated by 113 nucleotides
SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103
SMc02858
SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160
SMc02859
SMc02860: SMc02860 - hypothetical protein, at 214,165 to 214,800
SMc02860
SMc02861: SMc02861 - phosphate transporter, at 214,914 to 215,918
SMc02861
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1
2 at 212.771 kb on + strand, within SMc02858 at 213.470 kb on - strand, within SMc02859 at 213.470 kb on - strand, within SMc02859 at 213.633 kb on + strand, within SMc02859 at 213.805 kb on + strand, within SMc02859 at 213.971 kb on + strand, within SMc02859 at 214.066 kb on + strand, within SMc02859 at 214.384 kb on - strand, within SMc02860 at 214.384 kb on - strand, within SMc02860 at 214.616 kb on - strand, within SMc02860 at 214.742 kb on + strand at 214.742 kb on + strand at 214.743 kb on - strand at 214.816 kb on + strand at 214.817 kb on - strand at 214.867 kb on + strand at 214.867 kb on + strand at 214.868 kb on - strand at 214.868 kb on - strand at 214.869 kb on + strand at 214.870 kb on - strand at 214.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 212,771 + SMc02858 0.71 +0.5 213,470 - SMc02859 0.22 -0.5 213,470 - SMc02859 0.22 +0.7 213,633 + SMc02859 0.40 -0.3 213,805 + SMc02859 0.60 -0.9 213,971 + SMc02859 0.79 -1.2 214,066 + SMc02859 0.89 -0.4 214,384 - SMc02860 0.34 -1.1 214,384 - SMc02860 0.34 -0.0 214,616 - SMc02860 0.71 -0.1 214,742 + -0.2 214,742 + +0.3 214,743 - +2.0 214,816 + -0.1 214,817 - +0.6 214,867 + +0.0 214,867 + +1.4 214,868 - -0.4 214,868 - +1.0 214,869 + +1.0 214,870 - +0.2 214,940 - -0.3
Or see this region's nucleotide sequence