Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02604 and SMc02605 are separated by 22 nucleotides SMc02605 and SMc02606 overlap by 8 nucleotides SMc02606 and SMc02607 overlap by 4 nucleotides SMc02607 and SMc02608 are separated by 25 nucleotides
SMc02604: SMc02604 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 96,439 to 97,359
SMc02604
SMc02605: SMc02605 - sarcosine oxidase subunit gamma, at 97,382 to 97,915
SMc02605
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
SMc02607: SMc02607 - sarcosine oxidase subunit delta, at 100,868 to 101,146
SMc02607
SMc02608: SMc02608 - sarcosine oxidase subunit beta, at 101,172 to 102,422
SMc02608
Position (kb) 97
98
99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 97.214 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.215 kb on - strand, within SMc02604 at 98.092 kb on + strand at 98.093 kb on - strand at 98.459 kb on - strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.720 kb on - strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.859 kb on + strand, within SMc02606 at 99.271 kb on + strand, within SMc02606 at 99.272 kb on - strand, within SMc02606 at 99.299 kb on - strand, within SMc02606 at 99.375 kb on - strand, within SMc02606 at 99.408 kb on + strand, within SMc02606 at 99.409 kb on - strand, within SMc02606 at 99.866 kb on + strand, within SMc02606 at 99.866 kb on + strand, within SMc02606 at 99.868 kb on + strand, within SMc02606 at 99.934 kb on + strand, within SMc02606 at 99.935 kb on - strand, within SMc02606 at 100.152 kb on + strand, within SMc02606 at 100.387 kb on + strand, within SMc02606 at 100.388 kb on - strand, within SMc02606 at 100.408 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.453 kb on + strand, within SMc02606 at 100.454 kb on - strand, within SMc02606 at 100.496 kb on - strand, within SMc02606 at 100.498 kb on + strand, within SMc02606 at 100.499 kb on - strand, within SMc02606 at 100.600 kb on + strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.601 kb on - strand at 100.714 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.861 kb on + strand at 100.862 kb on - strand at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.332 kb on + strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.333 kb on - strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.353 kb on + strand, within SMc02608 at 101.354 kb on - strand, within SMc02608 at 101.364 kb on + strand, within SMc02608 at 101.415 kb on - strand, within SMc02608 at 101.528 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.858 kb on - strand, within SMc02608
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 97,214 + SMc02604 0.84 -0.3 97,214 + SMc02604 0.84 +0.8 97,215 - SMc02604 0.84 -0.6 98,092 + -0.0 98,093 - +0.3 98,459 - SMc02606 0.19 +0.0 98,562 + SMc02606 0.22 +0.2 98,562 + SMc02606 0.22 +0.4 98,563 - SMc02606 0.22 +3.1 98,563 - SMc02606 0.22 +1.8 98,563 - SMc02606 0.22 +0.4 98,563 - SMc02606 0.22 +0.1 98,564 + SMc02606 0.22 -1.1 98,564 + SMc02606 0.22 -0.0 98,564 + SMc02606 0.22 +0.3 98,720 - SMc02606 0.27 -0.7 98,807 + SMc02606 0.30 -0.1 98,807 + SMc02606 0.30 +0.2 98,808 - SMc02606 0.30 -1.7 98,808 - SMc02606 0.30 -0.3 98,808 - SMc02606 0.30 -0.2 98,808 - SMc02606 0.30 +0.6 98,859 + SMc02606 0.32 -0.3 99,271 + SMc02606 0.46 +0.7 99,272 - SMc02606 0.46 +0.6 99,299 - SMc02606 0.47 -0.2 99,375 - SMc02606 0.49 +1.0 99,408 + SMc02606 0.51 -0.0 99,409 - SMc02606 0.51 +0.1 99,866 + SMc02606 0.66 -0.2 99,866 + SMc02606 0.66 -0.6 99,868 + SMc02606 0.66 -0.8 99,934 + SMc02606 0.68 -0.7 99,935 - SMc02606 0.68 +1.6 100,152 + SMc02606 0.76 -1.7 100,387 + SMc02606 0.84 -0.8 100,388 - SMc02606 0.84 -0.1 100,408 + SMc02606 0.84 -0.0 100,453 + SMc02606 0.86 +0.4 100,453 + SMc02606 0.86 -0.6 100,453 + SMc02606 0.86 -0.5 100,454 - SMc02606 0.86 +0.0 100,496 - SMc02606 0.87 +0.2 100,498 + SMc02606 0.87 -1.0 100,499 - SMc02606 0.87 -0.2 100,600 + -2.0 100,601 - +0.8 100,601 - -0.7 100,601 - +0.6 100,714 + -0.3 100,861 + -0.7 100,861 + -1.0 100,861 + +0.4 100,862 - -0.8 101,332 + SMc02608 0.13 +0.1 101,332 + SMc02608 0.13 +0.1 101,332 + SMc02608 0.13 -1.0 101,333 - SMc02608 0.13 -1.3 101,333 - SMc02608 0.13 -0.4 101,333 - SMc02608 0.13 +0.1 101,353 + SMc02608 0.14 -0.5 101,353 + SMc02608 0.14 +0.2 101,353 + SMc02608 0.14 +0.9 101,354 - SMc02608 0.15 -0.6 101,364 + SMc02608 0.15 -1.3 101,415 - SMc02608 0.19 +0.8 101,528 - SMc02608 0.28 +0.3 101,582 - SMc02608 0.33 -0.3 101,582 - SMc02608 0.33 -0.4 101,857 + SMc02608 0.55 +0.1 101,857 + SMc02608 0.55 -0.9 101,858 - SMc02608 0.55 -0.1 101,858 - SMc02608 0.55 +0.1
Or see this region's nucleotide sequence