Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01848 and SMc01847 overlap by 4 nucleotides SMc01847 and SMc01846 are separated by 161 nucleotides SMc01846 and SMc01845 are separated by 136 nucleotides
SMc01848: SMc01848 - hypothetical protein, at 2,366,015 to 2,367,265
SMc01848
SMc01847: SMc01847 - methyltransferase, at 2,367,262 to 2,367,927
SMc01847
SMc01846: SMc01846 - hydrolase glycosidase, at 2,368,089 to 2,368,874
SMc01846
SMc01845: SMc01845 - transglycosylase transmembrane protein, at 2,369,011 to 2,370,228
SMc01845
Position (kb)
2368
2369 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.179 kb on + strand at 2367.180 kb on - strand at 2367.180 kb on - strand at 2367.180 kb on - strand at 2367.180 kb on - strand at 2367.180 kb on - strand at 2367.180 kb on - strand at 2367.231 kb on - strand at 2367.317 kb on - strand at 2367.317 kb on - strand at 2367.338 kb on - strand, within SMc01847 at 2367.358 kb on + strand, within SMc01847 at 2367.498 kb on + strand, within SMc01847 at 2367.499 kb on - strand, within SMc01847 at 2367.890 kb on - strand at 2367.890 kb on - strand at 2367.926 kb on - strand at 2367.972 kb on - strand at 2367.991 kb on + strand at 2367.991 kb on + strand at 2367.991 kb on + strand at 2368.374 kb on + strand, within SMc01846 at 2368.374 kb on + strand, within SMc01846 at 2368.375 kb on - strand, within SMc01846 at 2368.614 kb on + strand, within SMc01846 at 2368.635 kb on + strand, within SMc01846 at 2368.635 kb on + strand, within SMc01846 at 2368.636 kb on - strand, within SMc01846 at 2368.636 kb on - strand, within SMc01846 at 2368.636 kb on - strand, within SMc01846 at 2368.687 kb on - strand, within SMc01846 at 2368.731 kb on + strand, within SMc01846 at 2368.731 kb on + strand, within SMc01846 at 2368.731 kb on + strand, within SMc01846 at 2368.731 kb on + strand, within SMc01846 at 2368.732 kb on - strand, within SMc01846 at 2368.761 kb on + strand, within SMc01846 at 2368.761 kb on + strand, within SMc01846 at 2368.762 kb on - strand, within SMc01846 at 2368.763 kb on + strand, within SMc01846 at 2368.763 kb on + strand, within SMc01846 at 2368.763 kb on + strand, within SMc01846 at 2368.764 kb on - strand, within SMc01846 at 2368.764 kb on - strand, within SMc01846 at 2368.872 kb on + strand at 2368.920 kb on + strand at 2369.010 kb on - strand at 2369.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 2,367,179 + -0.8 2,367,179 + +1.1 2,367,179 + -0.4 2,367,179 + +0.9 2,367,179 + -0.9 2,367,179 + -1.8 2,367,179 + -0.1 2,367,180 - +0.0 2,367,180 - +0.1 2,367,180 - -0.5 2,367,180 - -0.9 2,367,180 - +0.8 2,367,180 - -1.8 2,367,231 - -1.8 2,367,317 - -1.4 2,367,317 - +0.6 2,367,338 - SMc01847 0.11 +0.5 2,367,358 + SMc01847 0.14 -0.8 2,367,498 + SMc01847 0.35 -0.0 2,367,499 - SMc01847 0.36 +0.1 2,367,890 - -0.0 2,367,890 - -0.5 2,367,926 - -0.7 2,367,972 - +0.2 2,367,991 + +0.8 2,367,991 + +0.2 2,367,991 + +0.2 2,368,374 + SMc01846 0.36 -0.1 2,368,374 + SMc01846 0.36 +0.3 2,368,375 - SMc01846 0.36 +1.6 2,368,614 + SMc01846 0.67 +0.7 2,368,635 + SMc01846 0.69 +1.9 2,368,635 + SMc01846 0.69 +0.8 2,368,636 - SMc01846 0.70 +0.8 2,368,636 - SMc01846 0.70 +0.6 2,368,636 - SMc01846 0.70 +1.1 2,368,687 - SMc01846 0.76 +0.2 2,368,731 + SMc01846 0.82 +2.3 2,368,731 + SMc01846 0.82 +1.7 2,368,731 + SMc01846 0.82 +1.4 2,368,731 + SMc01846 0.82 +1.6 2,368,732 - SMc01846 0.82 +1.6 2,368,761 + SMc01846 0.85 +1.0 2,368,761 + SMc01846 0.85 +1.9 2,368,762 - SMc01846 0.86 -0.3 2,368,763 + SMc01846 0.86 +1.0 2,368,763 + SMc01846 0.86 +1.4 2,368,763 + SMc01846 0.86 +1.1 2,368,764 - SMc01846 0.86 +0.2 2,368,764 - SMc01846 0.86 +1.2 2,368,872 + +0.4 2,368,920 + +0.7 2,369,010 - -2.0 2,369,010 - -2.4
Or see this region's nucleotide sequence