Strain Fitness in Sinorhizobium meliloti 1021 around SMc01846

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01848 and SMc01847 overlap by 4 nucleotidesSMc01847 and SMc01846 are separated by 161 nucleotidesSMc01846 and SMc01845 are separated by 136 nucleotides SMc01848: SMc01848 - hypothetical protein, at 2,366,015 to 2,367,265 SMc01848 SMc01847: SMc01847 - methyltransferase, at 2,367,262 to 2,367,927 SMc01847 SMc01846: SMc01846 - hydrolase glycosidase, at 2,368,089 to 2,368,874 SMc01846 SMc01845: SMc01845 - transglycosylase transmembrane protein, at 2,369,011 to 2,370,228 SMc01845 Position (kb) 2368 2369Strain fitness (log2 ratio) -2 -1 0 1 2at 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.179 kb on + strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.180 kb on - strandat 2367.231 kb on - strandat 2367.317 kb on - strandat 2367.317 kb on - strandat 2367.338 kb on - strand, within SMc01847at 2367.358 kb on + strand, within SMc01847at 2367.498 kb on + strand, within SMc01847at 2367.499 kb on - strand, within SMc01847at 2367.890 kb on - strandat 2367.890 kb on - strandat 2367.926 kb on - strandat 2367.972 kb on - strandat 2367.991 kb on + strandat 2367.991 kb on + strandat 2367.991 kb on + strandat 2368.374 kb on + strand, within SMc01846at 2368.374 kb on + strand, within SMc01846at 2368.375 kb on - strand, within SMc01846at 2368.614 kb on + strand, within SMc01846at 2368.635 kb on + strand, within SMc01846at 2368.635 kb on + strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.636 kb on - strand, within SMc01846at 2368.687 kb on - strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.731 kb on + strand, within SMc01846at 2368.732 kb on - strand, within SMc01846at 2368.761 kb on + strand, within SMc01846at 2368.761 kb on + strand, within SMc01846at 2368.762 kb on - strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.763 kb on + strand, within SMc01846at 2368.764 kb on - strand, within SMc01846at 2368.764 kb on - strand, within SMc01846at 2368.872 kb on + strandat 2368.920 kb on + strandat 2369.010 kb on - strandat 2369.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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2,367,179 + -0.8
2,367,179 + +1.1
2,367,179 + -0.4
2,367,179 + +0.9
2,367,179 + -0.9
2,367,179 + -1.8
2,367,179 + -0.1
2,367,180 - +0.0
2,367,180 - +0.1
2,367,180 - -0.5
2,367,180 - -0.9
2,367,180 - +0.8
2,367,180 - -1.8
2,367,231 - -1.8
2,367,317 - -1.4
2,367,317 - +0.6
2,367,338 - SMc01847 0.11 +0.5
2,367,358 + SMc01847 0.14 -0.8
2,367,498 + SMc01847 0.35 -0.0
2,367,499 - SMc01847 0.36 +0.1
2,367,890 - -0.0
2,367,890 - -0.5
2,367,926 - -0.7
2,367,972 - +0.2
2,367,991 + +0.8
2,367,991 + +0.2
2,367,991 + +0.2
2,368,374 + SMc01846 0.36 -0.1
2,368,374 + SMc01846 0.36 +0.3
2,368,375 - SMc01846 0.36 +1.6
2,368,614 + SMc01846 0.67 +0.7
2,368,635 + SMc01846 0.69 +1.9
2,368,635 + SMc01846 0.69 +0.8
2,368,636 - SMc01846 0.70 +0.8
2,368,636 - SMc01846 0.70 +0.6
2,368,636 - SMc01846 0.70 +1.1
2,368,687 - SMc01846 0.76 +0.2
2,368,731 + SMc01846 0.82 +2.3
2,368,731 + SMc01846 0.82 +1.7
2,368,731 + SMc01846 0.82 +1.4
2,368,731 + SMc01846 0.82 +1.6
2,368,732 - SMc01846 0.82 +1.6
2,368,761 + SMc01846 0.85 +1.0
2,368,761 + SMc01846 0.85 +1.9
2,368,762 - SMc01846 0.86 -0.3
2,368,763 + SMc01846 0.86 +1.0
2,368,763 + SMc01846 0.86 +1.4
2,368,763 + SMc01846 0.86 +1.1
2,368,764 - SMc01846 0.86 +0.2
2,368,764 - SMc01846 0.86 +1.2
2,368,872 + +0.4
2,368,920 + +0.7
2,369,010 - -2.0
2,369,010 - -2.4

Or see this region's nucleotide sequence