Strain Fitness in Sinorhizobium meliloti 1021 around SMc01727

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01728 and SMc01727 are separated by 37 nucleotidesSMc01727 and SMc01726 are separated by 194 nucleotides SMc01728: SMc01728 - transcriptional regulator, at 474,128 to 475,240 SMc01728 SMc01727: SMc01727 - hypothetical protein, at 475,278 to 476,048 SMc01727 SMc01726: SMc01726 - acetylglutamate kinase, at 476,243 to 477,130 SMc01726 Position (kb) 475 476 477Strain fitness (log2 ratio) -1 0 1 2at 474.295 kb on + strand, within SMc01728at 474.873 kb on - strand, within SMc01728at 474.943 kb on - strand, within SMc01728at 474.943 kb on - strand, within SMc01728at 475.239 kb on - strandat 475.239 kb on - strandat 475.275 kb on - strandat 475.275 kb on - strandat 475.275 kb on - strandat 475.345 kb on - strandat 475.542 kb on + strand, within SMc01727at 475.813 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.910 kb on - strand, within SMc01727at 475.975 kb on - strandat 476.034 kb on + strandat 476.122 kb on + strandat 476.188 kb on + strandat 476.188 kb on + strandat 476.189 kb on - strandat 476.556 kb on + strand, within SMc01726at 476.557 kb on - strand, within SMc01726at 476.557 kb on - strand, within SMc01726at 476.557 kb on - strand, within SMc01726

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
474,295 + SMc01728 0.15 +0.1
474,873 - SMc01728 0.67 -1.2
474,943 - SMc01728 0.73 +0.2
474,943 - SMc01728 0.73 -0.4
475,239 - +0.0
475,239 - -1.0
475,275 - +1.0
475,275 - +0.4
475,275 - -1.6
475,345 - +1.0
475,542 + SMc01727 0.34 -0.4
475,813 - SMc01727 0.69 -1.7
475,910 - SMc01727 0.82 -1.5
475,910 - SMc01727 0.82 -0.3
475,910 - SMc01727 0.82 -1.4
475,975 - +0.9
476,034 + -0.6
476,122 + -1.6
476,188 + -0.5
476,188 + -0.0
476,189 - +0.3
476,556 + SMc01726 0.35 +2.2
476,557 - SMc01726 0.35 +1.8
476,557 - SMc01726 0.35 +2.2
476,557 - SMc01726 0.35 +1.3

Or see this region's nucleotide sequence