Strain Fitness in Sinorhizobium meliloti 1021 around SMc01582

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01576 and SMc01579 are separated by 27 nucleotidesSMc01579 and SMc01582 are separated by 208 nucleotidesSMc01582 and SMc01588 overlap by 4 nucleotides SMc01576: SMc01576 - oxidoreductase, at 2,384,057 to 2,385,346 SMc01576 SMc01579: SMc01579 - hypothetical protein, at 2,385,374 to 2,386,090 SMc01579 SMc01582: SMc01582 - alcohol dehydrogenase, at 2,386,299 to 2,387,444 SMc01582 SMc01588: SMc01588 - aldehyde dehydrogenase, at 2,387,441 to 2,388,826 SMc01588 Position (kb) 2386 2387 2388Strain fitness (log2 ratio) -2 -1 0 1 2at 2385.555 kb on + strand, within SMc01579at 2386.154 kb on - strandat 2386.156 kb on + strandat 2386.401 kb on + strandat 2386.474 kb on + strand, within SMc01582at 2386.481 kb on - strand, within SMc01582at 2386.481 kb on - strand, within SMc01582at 2386.514 kb on - strand, within SMc01582at 2386.612 kb on + strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.613 kb on - strand, within SMc01582at 2386.733 kb on + strand, within SMc01582at 2386.733 kb on + strand, within SMc01582at 2386.735 kb on + strand, within SMc01582at 2386.736 kb on - strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.804 kb on + strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.805 kb on - strand, within SMc01582at 2386.820 kb on - strand, within SMc01582at 2387.283 kb on - strand, within SMc01582at 2387.466 kb on + strandat 2387.466 kb on + strandat 2387.565 kb on + strandat 2387.565 kb on + strandat 2387.566 kb on - strandat 2387.681 kb on + strand, within SMc01588at 2387.682 kb on - strand, within SMc01588at 2387.714 kb on - strand, within SMc01588at 2387.959 kb on - strand, within SMc01588at 2387.959 kb on - strand, within SMc01588at 2387.959 kb on - strand, within SMc01588at 2388.000 kb on + strand, within SMc01588at 2388.001 kb on - strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.018 kb on + strand, within SMc01588at 2388.019 kb on - strand, within SMc01588at 2388.058 kb on - strandat 2388.117 kb on + strand, within SMc01588at 2388.311 kb on + strand, within SMc01588at 2388.376 kb on + strand, within SMc01588at 2388.377 kb on - strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.421 kb on + strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.422 kb on - strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strandat 2388.423 kb on + strand, within SMc01588at 2388.423 kb on + strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.424 kb on - strand, within SMc01588at 2388.429 kb on + strand, within SMc01588at 2388.429 kb on + strand, within SMc01588

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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2,385,555 + SMc01579 0.25 -0.5
2,386,154 - +0.9
2,386,156 + +1.1
2,386,401 + -1.2
2,386,474 + SMc01582 0.15 -0.3
2,386,481 - SMc01582 0.16 -0.0
2,386,481 - SMc01582 0.16 -0.4
2,386,514 - SMc01582 0.19 -0.1
2,386,612 + SMc01582 0.27 +0.5
2,386,613 - SMc01582 0.27 -0.3
2,386,613 - SMc01582 0.27 +0.2
2,386,613 - SMc01582 0.27 -1.9
2,386,733 + SMc01582 0.38 -1.4
2,386,733 + SMc01582 0.38 +0.7
2,386,735 + SMc01582 0.38 -0.1
2,386,736 - SMc01582 0.38 -0.7
2,386,804 + SMc01582 0.44 +0.0
2,386,804 + SMc01582 0.44 +1.0
2,386,804 + SMc01582 0.44 -0.8
2,386,804 + SMc01582 0.44 +0.1
2,386,805 - SMc01582 0.44 +1.0
2,386,805 - SMc01582 0.44 -0.4
2,386,805 - SMc01582 0.44 -0.8
2,386,820 - SMc01582 0.45 -0.7
2,387,283 - SMc01582 0.86 -0.3
2,387,466 + +1.3
2,387,466 + -0.4
2,387,565 + -0.6
2,387,565 + +0.1
2,387,566 - -0.4
2,387,681 + SMc01588 0.17 +0.6
2,387,682 - SMc01588 0.17 +1.6
2,387,714 - SMc01588 0.20 -0.7
2,387,959 - SMc01588 0.37 +0.1
2,387,959 - SMc01588 0.37 +0.3
2,387,959 - SMc01588 0.37 -0.2
2,388,000 + SMc01588 0.40 -0.1
2,388,001 - SMc01588 0.40 +0.2
2,388,018 + SMc01588 0.42 -0.2
2,388,018 + SMc01588 0.42 -0.1
2,388,018 + SMc01588 0.42 -0.4
2,388,018 + SMc01588 0.42 -1.4
2,388,018 + SMc01588 0.42 +0.0
2,388,018 + SMc01588 0.42 +1.6
2,388,018 + SMc01588 0.42 -0.0
2,388,018 + SMc01588 0.42 -0.5
2,388,019 - SMc01588 0.42 -0.1
2,388,058 - -0.0
2,388,117 + SMc01588 0.49 +0.4
2,388,311 + SMc01588 0.63 -0.3
2,388,376 + SMc01588 0.67 +0.7
2,388,377 - SMc01588 0.68 +0.2
2,388,421 + SMc01588 0.71 +0.1
2,388,421 + SMc01588 0.71 -0.4
2,388,421 + SMc01588 0.71 -0.5
2,388,422 - SMc01588 0.71 +0.5
2,388,422 - SMc01588 0.71 -0.5
2,388,422 - SMc01588 0.71 +0.8
2,388,423 + SMc01588 0.71 -0.4
2,388,423 + SMc01588 0.71 -0.2
2,388,423 + SMc01588 0.71 -0.8
2,388,423 + +2.1
2,388,423 + SMc01588 0.71 +0.4
2,388,423 + SMc01588 0.71 -0.0
2,388,424 - SMc01588 0.71 +0.3
2,388,424 - SMc01588 0.71 -0.1
2,388,424 - SMc01588 0.71 -1.3
2,388,424 - SMc01588 0.71 -0.4
2,388,424 - SMc01588 0.71 -1.1
2,388,424 - SMc01588 0.71 +0.1
2,388,424 - SMc01588 0.71 -1.0
2,388,429 + SMc01588 0.71 +0.1
2,388,429 + SMc01588 0.71 -0.9

Or see this region's nucleotide sequence