Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01345 and SMc01344 are separated by 6 nucleotides SMc01344 and SMc01343 are separated by 23 nucleotides SMc01343 and SMc01342 are separated by 139 nucleotides SMc01342 and SMc01341 are separated by 53 nucleotides
SMc01345: SMc01345 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,435,047 to 1,436,396
SMc01345
SMc01344: SMc01344 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 1,436,403 to 1,436,879
SMc01344
SMc01343: SMc01343 - 3-dehydroquinate dehydratase, at 1,436,903 to 1,437,349
SMc01343
SMc01342: SMc01342 - hypothetical protein, at 1,437,489 to 1,438,256
SMc01342
SMc01341: SMc01341 - hypothetical protein, at 1,438,310 to 1,438,459
SMc01341
Position (kb)
1436
1437
1438 Strain fitness (log2 ratio)
-2
-1
0
1 at 1436.931 kb on - strand at 1437.350 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.383 kb on - strand at 1437.385 kb on - strand at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.586 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.626 kb on + strand, within SMc01342 at 1437.628 kb on + strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.653 kb on - strand, within SMc01342 at 1437.779 kb on - strand, within SMc01342 at 1437.928 kb on + strand, within SMc01342 at 1437.941 kb on - strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.990 kb on + strand, within SMc01342 at 1437.991 kb on - strand, within SMc01342 at 1438.126 kb on + strand, within SMc01342 at 1438.127 kb on - strand, within SMc01342 at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.280 kb on + strand at 1438.281 kb on - strand at 1438.281 kb on - strand at 1438.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,436,931 - +0.1 1,437,350 - +0.8 1,437,383 - +0.3 1,437,383 - +0.1 1,437,383 - +1.7 1,437,383 - -2.3 1,437,385 - +0.3 1,437,586 + SMc01342 0.13 -2.1 1,437,586 + SMc01342 0.13 -1.0 1,437,586 + SMc01342 0.13 -0.3 1,437,626 + SMc01342 0.18 -1.6 1,437,626 + SMc01342 0.18 -2.1 1,437,628 + SMc01342 0.18 -0.3 1,437,653 - SMc01342 0.21 +0.7 1,437,653 - SMc01342 0.21 -1.8 1,437,779 - SMc01342 0.38 -0.7 1,437,928 + SMc01342 0.57 +0.7 1,437,941 - SMc01342 0.59 -1.1 1,437,990 + SMc01342 0.65 -1.9 1,437,990 + SMc01342 0.65 +0.8 1,437,991 - SMc01342 0.65 -0.9 1,438,126 + SMc01342 0.83 -0.4 1,438,127 - SMc01342 0.83 +0.5 1,438,280 + +0.9 1,438,280 + -0.4 1,438,280 + -0.9 1,438,280 + -2.4 1,438,281 - +0.4 1,438,281 - -0.6 1,438,291 + +0.3
Or see this region's nucleotide sequence