Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01217 and SMc01216 are separated by 3 nucleotides SMc01216 and SMc01215 are separated by 128 nucleotides
SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424
SMc01217
SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730
SMc01216
SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350
SMc01215
Position (kb)
1708
1709 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 1707.454 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.508 kb on - strand, within SMc01217 at 1707.542 kb on - strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.681 kb on - strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.882 kb on + strand, within SMc01217 at 1707.950 kb on - strand, within SMc01217 at 1708.084 kb on - strand, within SMc01217 at 1708.230 kb on + strand, within SMc01217 at 1708.637 kb on - strand, within SMc01216 at 1708.639 kb on + strand, within SMc01216 at 1708.640 kb on - strand, within SMc01216 at 1708.721 kb on - strand at 1708.723 kb on - strand at 1709.368 kb on + strand, within SMc01215
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,707,454 + SMc01217 0.34 -0.9 1,707,507 + SMc01217 0.38 +0.5 1,707,507 + SMc01217 0.38 +2.1 1,707,507 + SMc01217 0.38 -1.0 1,707,508 - SMc01217 0.38 -0.6 1,707,542 - SMc01217 0.40 -0.3 1,707,658 + SMc01217 0.48 +1.4 1,707,658 + SMc01217 0.48 -1.6 1,707,659 - SMc01217 0.48 -0.3 1,707,659 - SMc01217 0.48 -0.6 1,707,681 - SMc01217 0.49 +0.3 1,707,873 + SMc01217 0.62 -0.2 1,707,873 + SMc01217 0.62 -0.5 1,707,874 - SMc01217 0.63 -0.4 1,707,874 - SMc01217 0.63 -0.5 1,707,874 - SMc01217 0.63 -0.2 1,707,882 + SMc01217 0.63 -0.3 1,707,950 - SMc01217 0.68 -0.1 1,708,084 - SMc01217 0.77 -0.5 1,708,230 + SMc01217 0.87 +0.4 1,708,637 - SMc01216 0.69 -1.5 1,708,639 + SMc01216 0.70 -0.8 1,708,640 - SMc01216 0.70 +0.1 1,708,721 - -0.4 1,708,723 - -0.1 1,709,368 + SMc01215 0.15 +5.1
Or see this region's nucleotide sequence