Strain Fitness in Sinorhizobium meliloti 1021 around SMc01187
Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.2 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,742,725 | - | +0.7 | |||
1,742,725 | - | +0.1 | |||
1,742,725 | - | -1.5 | |||
1,742,725 | - | -1.3 | |||
1,742,725 | - | -1.4 | |||
1,742,792 | + | +0.3 | |||
1,742,882 | + | SMc01187 | 0.12 | -1.8 | |
1,742,883 | - | SMc01187 | 0.12 | -0.4 | |
1,742,895 | - | SMc01187 | 0.13 | -1.9 | |
1,744,021 | + | +0.7 | |||
1,744,040 | + | +0.6 | |||
1,744,067 | + | +0.4 | |||
1,744,099 | + | +0.2 | |||
1,744,099 | + | +1.0 | |||
1,744,100 | - | -2.3 | |||
1,744,100 | - | -0.1 | |||
1,744,104 | + | -0.7 | |||
1,744,104 | + | +1.0 | |||
1,744,104 | + | +1.2 | |||
1,744,104 | + | +1.0 | |||
1,744,105 | - | -1.1 | |||
1,744,107 | + | +0.2 | |||
1,744,107 | + | +0.8 | |||
1,744,249 | + | -0.8 | |||
1,744,249 | + | -0.4 | |||
1,744,249 | + | -2.1 | |||
1,744,250 | - | -0.6 | |||
1,744,250 | - | -0.2 | |||
1,744,254 | + | -2.1 | |||
1,744,264 | + | -0.7 | |||
1,744,264 | + | -1.0 | |||
1,744,311 | - | -0.2 | |||
1,744,311 | - | -0.5 | |||
1,744,343 | - | -0.8 | |||
1,744,343 | - | +0.1 | |||
1,744,375 | - | +0.3 | |||
1,744,396 | + | +0.2 | |||
1,744,550 | + | SMc01186 | 0.11 | +0.2 | |
1,744,551 | - | SMc01186 | 0.11 | +0.3 | |
1,744,551 | - | SMc01186 | 0.11 | -0.7 | |
1,744,551 | - | SMc01186 | 0.11 | -0.6 | |
1,744,579 | + | SMc01186 | 0.22 | +0.2 | |
1,744,580 | - | SMc01186 | 0.22 | -1.3 | |
1,744,775 | + | -1.1 | |||
1,744,775 | + | +0.4 | |||
1,744,776 | - | -1.2 |
Or see this region's nucleotide sequence