Strain Fitness in Sinorhizobium meliloti 1021 around SMc01187

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01188 and SMc01187 are separated by 56 nucleotidesSMc01187 and SMc01186 are separated by 726 nucleotides SMc01188: SMc01188 - penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein, at 1,741,544 to 1,742,698 SMc01188 SMc01187: SMc01187 - rare lipoprotein A, at 1,742,755 to 1,743,795 SMc01187 SMc01186: SMc01186 - hypothetical protein, at 1,744,522 to 1,744,782 SMc01186 Position (kb) 1742 1743 1744Strain fitness (log2 ratio) -2 -1 0 1at 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.725 kb on - strandat 1742.792 kb on + strandat 1742.882 kb on + strand, within SMc01187at 1742.883 kb on - strand, within SMc01187at 1742.895 kb on - strand, within SMc01187at 1744.021 kb on + strandat 1744.040 kb on + strandat 1744.067 kb on + strandat 1744.099 kb on + strandat 1744.099 kb on + strandat 1744.100 kb on - strandat 1744.100 kb on - strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.104 kb on + strandat 1744.105 kb on - strandat 1744.107 kb on + strandat 1744.107 kb on + strandat 1744.249 kb on + strandat 1744.249 kb on + strandat 1744.249 kb on + strandat 1744.250 kb on - strandat 1744.250 kb on - strandat 1744.254 kb on + strandat 1744.264 kb on + strandat 1744.264 kb on + strandat 1744.311 kb on - strandat 1744.311 kb on - strandat 1744.343 kb on - strandat 1744.343 kb on - strandat 1744.375 kb on - strandat 1744.396 kb on + strandat 1744.550 kb on + strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.551 kb on - strand, within SMc01186at 1744.579 kb on + strand, within SMc01186at 1744.580 kb on - strand, within SMc01186at 1744.775 kb on + strandat 1744.775 kb on + strandat 1744.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,742,725 - +0.7
1,742,725 - +0.1
1,742,725 - -1.5
1,742,725 - -1.3
1,742,725 - -1.4
1,742,792 + +0.3
1,742,882 + SMc01187 0.12 -1.8
1,742,883 - SMc01187 0.12 -0.4
1,742,895 - SMc01187 0.13 -1.9
1,744,021 + +0.7
1,744,040 + +0.6
1,744,067 + +0.4
1,744,099 + +0.2
1,744,099 + +1.0
1,744,100 - -2.3
1,744,100 - -0.1
1,744,104 + -0.7
1,744,104 + +1.0
1,744,104 + +1.2
1,744,104 + +1.0
1,744,105 - -1.1
1,744,107 + +0.2
1,744,107 + +0.8
1,744,249 + -0.8
1,744,249 + -0.4
1,744,249 + -2.1
1,744,250 - -0.6
1,744,250 - -0.2
1,744,254 + -2.1
1,744,264 + -0.7
1,744,264 + -1.0
1,744,311 - -0.2
1,744,311 - -0.5
1,744,343 - -0.8
1,744,343 - +0.1
1,744,375 - +0.3
1,744,396 + +0.2
1,744,550 + SMc01186 0.11 +0.2
1,744,551 - SMc01186 0.11 +0.3
1,744,551 - SMc01186 0.11 -0.7
1,744,551 - SMc01186 0.11 -0.6
1,744,579 + SMc01186 0.22 +0.2
1,744,580 - SMc01186 0.22 -1.3
1,744,775 + -1.1
1,744,775 + +0.4
1,744,776 - -1.2

Or see this region's nucleotide sequence