Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00379 and SMc00380 are separated by 8 nucleotides SMc00380 and SMc00381 are separated by 113 nucleotides SMc00381 and SMc00382 are separated by 238 nucleotides
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
SMc00381: SMc00381 - hypothetical protein, at 334,588 to 335,460
SMc00381
SMc00382: SMc00382 - aminopeptidase, at 335,699 to 336,955
SMc00382
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand at 334.463 kb on - strand at 334.514 kb on - strand at 334.556 kb on + strand at 334.594 kb on - strand at 334.637 kb on + strand at 334.637 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.648 kb on - strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.652 kb on - strand at 334.832 kb on + strand, within SMc00381 at 334.859 kb on + strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 335.215 kb on - strand, within SMc00381 at 335.218 kb on + strand, within SMc00381 at 335.218 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.248 kb on + strand, within SMc00381 at 335.249 kb on - strand, within SMc00381 at 335.249 kb on - strand, within SMc00381 at 335.422 kb on + strand at 335.481 kb on - strand at 335.481 kb on - strand at 335.481 kb on - strand at 335.483 kb on + strand at 335.483 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.491 kb on + strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.492 kb on - strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.493 kb on + strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.494 kb on - strand at 335.570 kb on - strand at 335.694 kb on + strand at 335.695 kb on - strand at 335.875 kb on - strand, within SMc00382 at 335.875 kb on - strand, within SMc00382 at 335.929 kb on - strand, within SMc00382 at 336.091 kb on + strand, within SMc00382
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 333,758 - SMc00379 0.64 +1.4 333,807 + SMc00379 0.72 -0.1 333,807 + SMc00379 0.72 +0.3 333,807 + SMc00379 0.72 +0.3 333,807 + SMc00379 0.72 -0.1 333,936 - -0.3 334,463 - -0.5 334,514 - -1.9 334,556 + +0.3 334,594 - -0.3 334,637 + -0.4 334,637 + -1.0 334,647 + -1.5 334,647 + +1.7 334,647 + +0.1 334,647 + -0.9 334,648 - +0.3 334,651 + +0.5 334,651 + +0.4 334,651 + -0.3 334,652 - +0.3 334,832 + SMc00381 0.28 -1.6 334,859 + SMc00381 0.31 +0.7 334,860 - SMc00381 0.31 -0.5 334,860 - SMc00381 0.31 -0.1 335,215 - SMc00381 0.72 -0.0 335,218 + SMc00381 0.72 -0.2 335,218 + SMc00381 0.72 -1.1 335,248 + SMc00381 0.76 +0.1 335,248 + SMc00381 0.76 -0.0 335,248 + SMc00381 0.76 -0.9 335,248 + SMc00381 0.76 -0.8 335,248 + SMc00381 0.76 -0.6 335,248 + SMc00381 0.76 -0.1 335,249 - SMc00381 0.76 -0.1 335,249 - SMc00381 0.76 -0.3 335,422 + +2.0 335,481 - +1.5 335,481 - -1.7 335,481 - -1.3 335,483 + -0.1 335,483 + +2.0 335,491 + +1.1 335,491 + -0.1 335,491 + -0.2 335,491 + +3.5 335,491 + +0.6 335,491 + -1.2 335,491 + +3.0 335,491 + -0.4 335,491 + -0.3 335,492 - +0.1 335,492 - -1.4 335,492 - +1.5 335,492 - +0.5 335,493 + -0.1 335,493 + -0.4 335,493 + +0.8 335,493 + -1.1 335,493 + +0.0 335,494 - -0.5 335,494 - +1.3 335,494 - +0.2 335,494 - +0.4 335,494 - -0.6 335,570 - +0.8 335,694 + +0.0 335,695 - -0.8 335,875 - SMc00382 0.14 +0.1 335,875 - SMc00382 0.14 +0.3 335,929 - SMc00382 0.18 +0.6 336,091 + SMc00382 0.31 -0.3
Or see this region's nucleotide sequence