Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00007 and SMc00008 are separated by 91 nucleotides SMc00008 and SMc00071 are separated by 68 nucleotides
SMc00007: SMc00007 - chorismate synthase, at 988,748 to 989,845
SMc00007
SMc00008: SMc00008 - riboflavin biosynthesis protein RibA, at 989,937 to 991,037
SMc00008
SMc00071: SMc00071 - hypothetical protein, at 991,106 to 991,636
SMc00071
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -2
-1
0
1
2 at 989.843 kb on + strand at 989.844 kb on - strand at 989.917 kb on + strand at 989.918 kb on - strand at 989.932 kb on + strand at 989.932 kb on + strand at 989.932 kb on + strand at 989.933 kb on - strand at 989.933 kb on - strand at 989.933 kb on - strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.943 kb on + strand at 989.944 kb on - strand at 990.095 kb on + strand, within SMc00008 at 990.095 kb on + strand, within SMc00008 at 990.095 kb on + strand, within SMc00008 at 990.096 kb on - strand, within SMc00008 at 990.096 kb on - strand, within SMc00008 at 990.260 kb on + strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.371 kb on + strand, within SMc00008 at 990.618 kb on + strand, within SMc00008 at 990.619 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008 at 990.984 kb on + strand at 990.984 kb on + strand at 990.985 kb on - strand at 990.985 kb on - strand at 990.985 kb on - strand at 990.985 kb on - strand at 991.057 kb on - strand at 991.669 kb on - strand at 991.690 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 989,843 + -0.6 989,844 - +2.0 989,917 + +0.0 989,918 - -0.6 989,932 + +0.0 989,932 + +0.7 989,932 + -1.4 989,933 - +0.4 989,933 - -0.6 989,933 - -0.2 989,934 + -0.8 989,934 + -0.7 989,934 + -1.2 989,934 + +0.6 989,934 + -0.4 989,934 + -0.1 989,934 + -0.4 989,934 + -0.8 989,935 - +1.0 989,935 - +0.0 989,935 - -0.6 989,935 - +0.5 989,935 - +2.6 989,935 - -1.0 989,935 - +1.6 989,935 - -0.6 989,935 - +0.5 989,935 - -0.8 989,936 + -0.9 989,936 + -0.8 989,936 + -0.7 989,936 + -1.4 989,936 + +1.4 989,936 + -1.2 989,936 + -0.9 989,937 - -0.9 989,937 - +0.1 989,937 - -1.5 989,937 - +0.3 989,943 + -0.1 989,944 - -0.2 990,095 + SMc00008 0.14 -0.2 990,095 + SMc00008 0.14 -0.2 990,095 + SMc00008 0.14 +0.1 990,096 - SMc00008 0.14 -0.8 990,096 - SMc00008 0.14 +0.6 990,260 + SMc00008 0.29 -0.4 990,261 - SMc00008 0.29 -0.9 990,261 - SMc00008 0.29 -2.2 990,322 + SMc00008 0.35 -0.4 990,322 + SMc00008 0.35 -0.6 990,323 - SMc00008 0.35 -1.1 990,323 - SMc00008 0.35 -0.9 990,323 - SMc00008 0.35 +0.2 990,371 + SMc00008 0.39 -0.3 990,618 + SMc00008 0.62 -0.4 990,619 - SMc00008 0.62 -0.5 990,799 - SMc00008 0.78 -0.1 990,799 - SMc00008 0.78 +0.9 990,984 + -1.0 990,984 + +0.0 990,985 - +0.6 990,985 - -0.1 990,985 - -0.6 990,985 - +0.0 991,057 - -0.2 991,669 - -0.7 991,690 - +1.2
Or see this region's nucleotide sequence