Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00006 and SMc00070 are separated by 10 nucleotides SMc00070 and SMc00007 are separated by 440 nucleotides SMc00007 and SMc00008 are separated by 91 nucleotides
SMc00006: SMc00006 - hypothetical protein, at 987,452 to 988,036
SMc00006
SMc00070: SMc00070 - signal peptide protein, at 988,047 to 988,307
SMc00070
SMc00007: SMc00007 - chorismate synthase, at 988,748 to 989,845
SMc00007
SMc00008: SMc00008 - riboflavin biosynthesis protein RibA, at 989,937 to 991,037
SMc00008
Position (kb) 988
989
990 Strain fitness (log2 ratio) -2
-1
0
1
2 at 987.842 kb on + strand, within SMc00006 at 987.842 kb on + strand, within SMc00006 at 987.843 kb on - strand, within SMc00006 at 988.049 kb on - strand at 988.162 kb on + strand, within SMc00070 at 988.163 kb on - strand, within SMc00070 at 988.163 kb on - strand, within SMc00070 at 988.385 kb on + strand at 988.386 kb on - strand at 988.449 kb on + strand at 988.449 kb on + strand at 988.624 kb on + strand at 989.843 kb on + strand at 989.844 kb on - strand at 989.917 kb on + strand at 989.918 kb on - strand at 989.932 kb on + strand at 989.932 kb on + strand at 989.932 kb on + strand at 989.933 kb on - strand at 989.933 kb on - strand at 989.933 kb on - strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.934 kb on + strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.935 kb on - strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.936 kb on + strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.937 kb on - strand at 989.943 kb on + strand at 989.944 kb on - strand at 990.095 kb on + strand, within SMc00008 at 990.095 kb on + strand, within SMc00008 at 990.095 kb on + strand, within SMc00008 at 990.096 kb on - strand, within SMc00008 at 990.096 kb on - strand, within SMc00008 at 990.260 kb on + strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.261 kb on - strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.322 kb on + strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.323 kb on - strand, within SMc00008 at 990.371 kb on + strand, within SMc00008 at 990.618 kb on + strand, within SMc00008 at 990.619 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008 at 990.799 kb on - strand, within SMc00008
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 987,842 + SMc00006 0.67 +1.6 987,842 + SMc00006 0.67 -1.5 987,843 - SMc00006 0.67 +1.2 988,049 - +0.9 988,162 + SMc00070 0.44 +1.3 988,163 - SMc00070 0.44 +1.7 988,163 - SMc00070 0.44 +1.4 988,385 + +1.6 988,386 - -0.0 988,449 + -1.0 988,449 + -1.0 988,624 + -0.0 989,843 + -0.6 989,844 - +2.0 989,917 + +0.0 989,918 - -0.6 989,932 + +0.0 989,932 + +0.7 989,932 + -1.4 989,933 - +0.4 989,933 - -0.6 989,933 - -0.2 989,934 + -0.8 989,934 + -0.7 989,934 + -1.2 989,934 + +0.6 989,934 + -0.4 989,934 + -0.1 989,934 + -0.4 989,934 + -0.8 989,935 - +1.0 989,935 - +0.0 989,935 - -0.6 989,935 - +0.5 989,935 - +2.6 989,935 - -1.0 989,935 - +1.6 989,935 - -0.6 989,935 - +0.5 989,935 - -0.8 989,936 + -0.9 989,936 + -0.8 989,936 + -0.7 989,936 + -1.4 989,936 + +1.4 989,936 + -1.2 989,936 + -0.9 989,937 - -0.9 989,937 - +0.1 989,937 - -1.5 989,937 - +0.3 989,943 + -0.1 989,944 - -0.2 990,095 + SMc00008 0.14 -0.2 990,095 + SMc00008 0.14 -0.2 990,095 + SMc00008 0.14 +0.1 990,096 - SMc00008 0.14 -0.8 990,096 - SMc00008 0.14 +0.6 990,260 + SMc00008 0.29 -0.4 990,261 - SMc00008 0.29 -0.9 990,261 - SMc00008 0.29 -2.2 990,322 + SMc00008 0.35 -0.4 990,322 + SMc00008 0.35 -0.6 990,323 - SMc00008 0.35 -1.1 990,323 - SMc00008 0.35 -0.9 990,323 - SMc00008 0.35 +0.2 990,371 + SMc00008 0.39 -0.3 990,618 + SMc00008 0.62 -0.4 990,619 - SMc00008 0.62 -0.5 990,799 - SMc00008 0.78 -0.1 990,799 - SMc00008 0.78 +0.9
Or see this region's nucleotide sequence