Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1651 and SMa1652 are separated by 265 nucleotides SMa1652 and SMa1653 are separated by 2 nucleotides SMa1653 and SMa1654 are separated by 162 nucleotides
SMa1651: SMa1651 - ABC transporter substrate-binding protein, at 921,222 to 922,799
SMa1651
SMa1652: SMa1652 - hydantoin racemase, at 923,065 to 923,850
SMa1652
SMa1653: SMa1653 - hypothetical protein, at 923,853 to 924,578
SMa1653
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
Position (kb) 923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 922.150 kb on + strand, within SMa1651 at 922.150 kb on + strand, within SMa1651 at 922.151 kb on - strand, within SMa1651 at 922.151 kb on - strand, within SMa1651 at 922.181 kb on - strand, within SMa1651 at 922.181 kb on - strand, within SMa1651 at 922.306 kb on + strand, within SMa1651 at 922.323 kb on + strand, within SMa1651 at 922.358 kb on + strand, within SMa1651 at 922.359 kb on - strand, within SMa1651 at 922.364 kb on - strand, within SMa1651 at 922.364 kb on - strand, within SMa1651 at 922.588 kb on + strand, within SMa1651 at 922.588 kb on + strand, within SMa1651 at 922.636 kb on + strand, within SMa1651 at 922.636 kb on + strand, within SMa1651 at 922.637 kb on - strand, within SMa1651 at 922.781 kb on + strand at 922.840 kb on - strand at 923.037 kb on - strand at 923.041 kb on + strand at 923.046 kb on - strand at 923.081 kb on + strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.095 kb on - strand at 923.206 kb on + strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.220 kb on - strand, within SMa1652 at 923.449 kb on + strand, within SMa1652 at 923.498 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.517 kb on + strand, within SMa1652 at 923.518 kb on - strand, within SMa1652 at 923.591 kb on + strand, within SMa1652 at 923.592 kb on - strand, within SMa1652 at 923.630 kb on + strand, within SMa1652 at 923.740 kb on + strand, within SMa1652 at 923.759 kb on - strand, within SMa1652 at 923.841 kb on - strand at 923.841 kb on - strand at 923.844 kb on + strand at 923.845 kb on - strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.848 kb on + strand at 923.849 kb on - strand at 923.849 kb on - strand at 924.313 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.321 kb on + strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.322 kb on - strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.357 kb on + strand, within SMa1653 at 924.358 kb on - strand, within SMa1653 at 924.494 kb on - strand, within SMa1653 at 924.649 kb on - strand at 924.685 kb on + strand at 924.700 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.792 kb on + strand at 924.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 922,150 + SMa1651 0.59 -0.7 922,150 + SMa1651 0.59 -0.6 922,151 - SMa1651 0.59 +0.3 922,151 - SMa1651 0.59 +0.6 922,181 - SMa1651 0.61 -0.3 922,181 - SMa1651 0.61 -0.0 922,306 + SMa1651 0.69 -1.4 922,323 + SMa1651 0.70 -0.0 922,358 + SMa1651 0.72 -0.2 922,359 - SMa1651 0.72 -0.3 922,364 - SMa1651 0.72 -0.2 922,364 - SMa1651 0.72 -0.5 922,588 + SMa1651 0.87 +1.3 922,588 + SMa1651 0.87 +0.2 922,636 + SMa1651 0.90 -0.9 922,636 + SMa1651 0.90 -0.5 922,637 - SMa1651 0.90 +0.1 922,781 + +1.2 922,840 - +0.5 923,037 - +0.2 923,041 + +1.3 923,046 - -1.2 923,081 + +0.2 923,095 - +0.6 923,095 - -0.8 923,095 - +0.3 923,095 - -0.9 923,206 + SMa1652 0.18 +0.3 923,220 - SMa1652 0.20 -0.8 923,220 - SMa1652 0.20 -1.1 923,449 + SMa1652 0.49 -0.0 923,498 + SMa1652 0.55 +2.0 923,517 + SMa1652 0.58 +0.1 923,517 + SMa1652 0.58 -0.2 923,517 + SMa1652 0.58 -1.0 923,518 - SMa1652 0.58 -0.0 923,591 + SMa1652 0.67 -0.9 923,592 - SMa1652 0.67 -2.0 923,630 + SMa1652 0.72 +0.7 923,740 + SMa1652 0.86 +0.5 923,759 - SMa1652 0.88 -1.1 923,841 - +1.2 923,841 - -0.0 923,844 + -1.0 923,845 - -0.5 923,848 + -0.2 923,848 + +0.3 923,848 + -0.3 923,849 - -0.3 923,849 - -0.2 924,313 + SMa1653 0.63 +0.1 924,321 + SMa1653 0.64 +0.5 924,321 + SMa1653 0.64 +0.1 924,322 - SMa1653 0.65 -0.0 924,322 - SMa1653 0.65 +0.0 924,357 + SMa1653 0.69 +0.4 924,357 + SMa1653 0.69 -0.9 924,357 + SMa1653 0.69 -0.0 924,358 - SMa1653 0.70 +1.2 924,494 - SMa1653 0.88 -0.1 924,649 - -1.5 924,685 + +0.3 924,700 + -0.1 924,792 + -0.4 924,792 + +0.2 924,792 + -1.2 924,793 - -1.2
Or see this region's nucleotide sequence