Strain Fitness in Sinorhizobium meliloti 1021 around SMa1647

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1646 and SMa1647 overlap by 4 nucleotidesSMa1647 and SMa1649 overlap by 11 nucleotidesSMa1649 and SMa1650 overlap by 10 nucleotides SMa1646: SMa1646 - ABC transporter ATP-binding protein, at 917,367 to 918,389 SMa1646 SMa1647: SMa1647 - ABC transporter ATP-binding protein, at 918,386 to 919,381 SMa1647 SMa1649: SMa1649 - ABC transporter permease, at 919,371 to 920,282 SMa1649 SMa1650: SMa1650 - ABC transporter permease, at 920,273 to 921,208 SMa1650 Position (kb) 918 919 920Strain fitness (log2 ratio) -2 -1 0 1 2at 917.454 kb on - strandat 917.454 kb on - strandat 917.565 kb on + strand, within SMa1646at 917.566 kb on - strand, within SMa1646at 917.566 kb on - strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.660 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.713 kb on + strand, within SMa1646at 917.714 kb on - strand, within SMa1646at 917.714 kb on - strand, within SMa1646at 917.722 kb on + strand, within SMa1646at 917.723 kb on - strand, within SMa1646at 917.839 kb on - strand, within SMa1646at 918.025 kb on + strand, within SMa1646at 918.025 kb on + strand, within SMa1646at 918.094 kb on + strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.095 kb on - strand, within SMa1646at 918.112 kb on + strand, within SMa1646at 918.113 kb on - strand, within SMa1646at 918.169 kb on - strand, within SMa1646at 918.169 kb on - strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.319 kb on + strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.320 kb on - strandat 918.549 kb on - strand, within SMa1647at 918.549 kb on - strand, within SMa1647at 918.611 kb on + strand, within SMa1647at 918.687 kb on + strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.688 kb on - strand, within SMa1647at 918.884 kb on + strand, within SMa1647at 918.952 kb on + strand, within SMa1647at 918.974 kb on + strand, within SMa1647at 918.975 kb on - strand, within SMa1647at 918.975 kb on - strand, within SMa1647at 919.055 kb on + strand, within SMa1647at 919.136 kb on + strand, within SMa1647at 919.291 kb on - strandat 919.291 kb on - strandat 919.559 kb on - strand, within SMa1649at 919.675 kb on + strand, within SMa1649at 919.675 kb on + strand, within SMa1649at 919.675 kb on + strand, within SMa1649at 919.676 kb on - strand, within SMa1649at 919.676 kb on - strand, within SMa1649at 919.762 kb on - strand, within SMa1649at 919.762 kb on - strand, within SMa1649at 919.764 kb on - strand, within SMa1649at 919.782 kb on - strand, within SMa1649at 919.782 kb on - strand, within SMa1649at 919.782 kb on - strand, within SMa1649at 919.844 kb on + strand, within SMa1649at 919.997 kb on + strand, within SMa1649at 919.997 kb on + strand, within SMa1649at 919.998 kb on - strand, within SMa1649at 919.998 kb on - strand, within SMa1649at 920.003 kb on + strand, within SMa1649at 920.004 kb on - strand, within SMa1649at 920.004 kb on - strand, within SMa1649at 920.054 kb on + strand, within SMa1649at 920.262 kb on + strandat 920.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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917,454 - -1.3
917,454 - -0.5
917,565 + SMa1646 0.19 +0.7
917,566 - SMa1646 0.19 +0.3
917,566 - SMa1646 0.19 -0.4
917,660 + SMa1646 0.29 -0.6
917,660 + SMa1646 0.29 +0.6
917,660 + SMa1646 0.29 -0.5
917,713 + SMa1646 0.34 +1.0
917,713 + SMa1646 0.34 -0.3
917,713 + SMa1646 0.34 -0.2
917,714 - SMa1646 0.34 -0.7
917,714 - SMa1646 0.34 -0.8
917,722 + SMa1646 0.35 -1.8
917,723 - SMa1646 0.35 +0.6
917,839 - SMa1646 0.46 -0.6
918,025 + SMa1646 0.64 -1.0
918,025 + SMa1646 0.64 -2.1
918,094 + SMa1646 0.71 -0.5
918,095 - SMa1646 0.71 +0.4
918,095 - SMa1646 0.71 -0.7
918,095 - SMa1646 0.71 +0.1
918,095 - SMa1646 0.71 -0.9
918,112 + SMa1646 0.73 -0.1
918,113 - SMa1646 0.73 -0.6
918,169 - SMa1646 0.78 +0.9
918,169 - +2.3
918,319 + -0.2
918,319 + +1.7
918,319 + -1.6
918,319 + -0.3
918,320 - +0.1
918,320 - +0.1
918,320 - +0.9
918,320 - -1.1
918,320 - -1.0
918,549 - SMa1647 0.16 +1.2
918,549 - SMa1647 0.16 +1.0
918,611 + SMa1647 0.23 +0.7
918,687 + SMa1647 0.30 +0.3
918,688 - SMa1647 0.30 +1.3
918,688 - SMa1647 0.30 +0.4
918,688 - SMa1647 0.30 -1.0
918,884 + SMa1647 0.50 +0.1
918,952 + SMa1647 0.57 -0.4
918,974 + SMa1647 0.59 -1.3
918,975 - SMa1647 0.59 -0.1
918,975 - SMa1647 0.59 -0.4
919,055 + SMa1647 0.67 -0.6
919,136 + SMa1647 0.75 -1.0
919,291 - +0.4
919,291 - -0.1
919,559 - SMa1649 0.21 +0.5
919,675 + SMa1649 0.33 +0.3
919,675 + SMa1649 0.33 -2.1
919,675 + SMa1649 0.33 -0.2
919,676 - SMa1649 0.33 +0.4
919,676 - SMa1649 0.33 -0.9
919,762 - SMa1649 0.43 +0.1
919,762 - SMa1649 0.43 -0.5
919,764 - SMa1649 0.43 +1.8
919,782 - SMa1649 0.45 +2.7
919,782 - SMa1649 0.45 -0.5
919,782 - SMa1649 0.45 +2.1
919,844 + SMa1649 0.52 +0.2
919,997 + SMa1649 0.69 -1.8
919,997 + SMa1649 0.69 +0.3
919,998 - SMa1649 0.69 -0.0
919,998 - SMa1649 0.69 -0.8
920,003 + SMa1649 0.69 +1.0
920,004 - SMa1649 0.69 -0.9
920,004 - SMa1649 0.69 +0.0
920,054 + SMa1649 0.75 -0.5
920,262 + -1.4
920,263 - -0.7

Or see this region's nucleotide sequence