Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1371 and SMa1374 are separated by 2 nucleotides SMa1374 and SMa1373 overlap by 1 nucleotides SMa1373 and SMa1375 are separated by 78 nucleotides
SMa1371: SMa1371 - ABC transporter ATP-binding protein, at 753,652 to 754,632
SMa1371
SMa1374: SMa1374 - ABC transporter permease, at 754,635 to 755,594
SMa1374
SMa1373: SMa1373 - ABC transporter permease, at 755,594 to 756,514
SMa1373
SMa1375: SMa1375 - ABC transporter substrate-binding protein, at 756,593 to 758,077
SMa1375
Position (kb) 755
756
757 Strain fitness (log2 ratio) -2
-1
0
1 at 754.817 kb on - strand, within SMa1374 at 754.817 kb on - strand, within SMa1374 at 754.887 kb on + strand, within SMa1374 at 755.023 kb on + strand, within SMa1374 at 755.071 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.157 kb on + strand, within SMa1374 at 755.158 kb on - strand, within SMa1374 at 755.346 kb on - strand, within SMa1374 at 755.434 kb on + strand, within SMa1374 at 755.435 kb on - strand, within SMa1374 at 755.435 kb on - strand, within SMa1374 at 755.819 kb on - strand, within SMa1373 at 755.819 kb on - strand, within SMa1373 at 755.846 kb on + strand, within SMa1373 at 755.851 kb on + strand, within SMa1373 at 755.852 kb on - strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.866 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.907 kb on + strand, within SMa1373 at 755.908 kb on - strand, within SMa1373 at 755.983 kb on + strand, within SMa1373 at 755.984 kb on - strand, within SMa1373 at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.514 kb on + strand at 756.515 kb on - strand at 756.515 kb on - strand at 756.573 kb on + strand at 756.574 kb on - strand at 756.574 kb on - strand at 756.595 kb on - strand at 756.602 kb on + strand at 756.672 kb on + strand at 756.672 kb on + strand at 756.672 kb on + strand at 756.705 kb on + strand at 756.705 kb on + strand at 756.706 kb on - strand at 756.706 kb on - strand at 756.706 kb on - strand at 757.126 kb on - strand, within SMa1375 at 757.126 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.195 kb on - strand, within SMa1375 at 757.273 kb on + strand, within SMa1375 at 757.274 kb on - strand, within SMa1375
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 754,817 - SMa1374 0.19 -0.1 754,817 - SMa1374 0.19 +0.4 754,887 + SMa1374 0.26 +0.4 755,023 + SMa1374 0.40 -0.6 755,071 + SMa1374 0.45 -0.3 755,157 + SMa1374 0.54 -1.3 755,157 + SMa1374 0.54 +1.0 755,157 + SMa1374 0.54 +0.2 755,157 + SMa1374 0.54 -0.9 755,157 + SMa1374 0.54 -0.9 755,158 - SMa1374 0.54 -0.3 755,346 - SMa1374 0.74 -0.4 755,434 + SMa1374 0.83 -1.2 755,435 - SMa1374 0.83 -0.4 755,435 - SMa1374 0.83 +0.9 755,819 - SMa1373 0.24 -0.6 755,819 - SMa1373 0.24 -0.1 755,846 + SMa1373 0.27 -1.0 755,851 + SMa1373 0.28 -0.3 755,852 - SMa1373 0.28 -0.1 755,866 + SMa1373 0.30 -0.2 755,866 + SMa1373 0.30 -0.8 755,907 + SMa1373 0.34 +0.1 755,907 + SMa1373 0.34 +0.6 755,907 + SMa1373 0.34 -1.2 755,908 - SMa1373 0.34 -0.8 755,983 + SMa1373 0.42 -0.2 755,984 - SMa1373 0.42 -1.2 756,514 + -0.2 756,514 + -0.6 756,514 + -2.1 756,514 + -0.6 756,515 - -0.3 756,515 - +0.3 756,573 + -0.3 756,574 - -1.6 756,574 - -0.6 756,595 - -0.3 756,602 + +0.5 756,672 + -0.4 756,672 + -0.4 756,672 + +0.1 756,705 + -0.5 756,705 + +0.9 756,706 - -1.0 756,706 - -2.2 756,706 - -0.2 757,126 - SMa1375 0.36 -1.2 757,126 - SMa1375 0.36 +0.8 757,195 - SMa1375 0.41 +0.0 757,195 - SMa1375 0.41 -0.2 757,273 + SMa1375 0.46 +0.1 757,274 - SMa1375 0.46 -0.4
Or see this region's nucleotide sequence