Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1241 and SMa1243 are separated by 259 nucleotides SMa1243 and SMa1245 are separated by 110 nucleotides SMa1245 and SMa1247 are separated by 624 nucleotides
SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650
SMa1241
SMa1243: SMa1243 - Azu1 pseudoazurin, at 680,910 to 681,353
SMa1243
SMa1245: SMa1245 - Crp/fnr-like transcriptional regulator, at 681,464 to 682,111
SMa1245
SMa1247: SMa1247 - NirV protein, at 682,736 to 683,650
SMa1247
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 680.731 kb on - strand at 680.911 kb on + strand at 681.092 kb on + strand at 681.094 kb on + strand, within SMa1243 at 681.094 kb on + strand, within SMa1243 at 681.095 kb on - strand, within SMa1243 at 681.164 kb on + strand, within SMa1243 at 681.164 kb on + strand, within SMa1243 at 681.165 kb on - strand, within SMa1243 at 681.165 kb on - strand, within SMa1243 at 681.406 kb on - strand at 681.411 kb on - strand at 681.465 kb on + strand at 681.466 kb on - strand at 681.644 kb on + strand, within SMa1245 at 681.645 kb on - strand, within SMa1245 at 681.784 kb on + strand, within SMa1245 at 681.784 kb on + strand, within SMa1245 at 681.784 kb on + strand, within SMa1245 at 681.785 kb on - strand, within SMa1245 at 682.171 kb on + strand at 682.217 kb on + strand at 682.218 kb on - strand at 682.435 kb on + strand at 682.436 kb on - strand at 682.611 kb on - strand at 682.761 kb on - strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.782 kb on + strand at 682.783 kb on - strand at 682.908 kb on + strand, within SMa1247 at 682.908 kb on + strand, within SMa1247 at 682.969 kb on + strand, within SMa1247 at 682.969 kb on + strand, within SMa1247
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 680,731 - -0.3 680,911 + +0.1 681,092 + +3.2 681,094 + SMa1243 0.41 +0.4 681,094 + SMa1243 0.41 -0.4 681,095 - SMa1243 0.42 -0.5 681,164 + SMa1243 0.57 -0.1 681,164 + SMa1243 0.57 +0.2 681,165 - SMa1243 0.57 -0.3 681,165 - SMa1243 0.57 +1.3 681,406 - +0.4 681,411 - +0.2 681,465 + -0.1 681,466 - -0.2 681,644 + SMa1245 0.28 +2.2 681,645 - SMa1245 0.28 -0.2 681,784 + SMa1245 0.49 +0.7 681,784 + SMa1245 0.49 +1.8 681,784 + SMa1245 0.49 +2.4 681,785 - SMa1245 0.50 +1.1 682,171 + +1.1 682,217 + +0.8 682,218 - -0.7 682,435 + -0.7 682,436 - +0.7 682,611 - +1.3 682,761 - -0.4 682,782 + -0.9 682,782 + +1.0 682,782 + -0.5 682,782 + -2.1 682,783 - +0.9 682,908 + SMa1247 0.19 +0.4 682,908 + SMa1247 0.19 +0.7 682,969 + SMa1247 0.25 +0.7 682,969 + SMa1247 0.25 +0.1
Or see this region's nucleotide sequence