Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0769 and SMa0771 are separated by 188 nucleotides SMa0771 and SMa0772 are separated by 102 nucleotides
SMa0769: SMa0769 - FixP2 Diheme c-type cytochrome, at 416,717 to 417,580
SMa0769
SMa0771: SMa0771 - hypothetical protein, at 417,769 to 418,242
SMa0771
SMa0772: SMa0772 - NodL Nod factor acetyltransferase, at 418,345 to 418,896
SMa0772
Position (kb) 417
418
419 Strain fitness (log2 ratio) -1
0
1 at 416.820 kb on - strand, within SMa0769 at 416.868 kb on - strand, within SMa0769 at 417.173 kb on + strand, within SMa0769 at 417.174 kb on - strand, within SMa0769 at 417.287 kb on + strand, within SMa0769 at 417.288 kb on - strand, within SMa0769 at 417.288 kb on - strand, within SMa0769 at 417.288 kb on - strand, within SMa0769 at 418.141 kb on - strand, within SMa0771 at 418.195 kb on - strand at 418.260 kb on - strand at 418.292 kb on - strand at 418.292 kb on - strand at 418.455 kb on + strand, within SMa0772 at 418.456 kb on - strand, within SMa0772 at 418.559 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.592 kb on - strand, within SMa0772 at 418.593 kb on + strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.676 kb on - strand, within SMa0772 at 418.941 kb on - strand at 419.064 kb on - strand at 419.102 kb on + strand at 419.102 kb on + strand at 419.103 kb on - strand at 419.133 kb on - strand at 419.151 kb on + strand at 419.151 kb on + strand at 419.152 kb on - strand at 419.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 416,820 - SMa0769 0.12 -0.3 416,868 - SMa0769 0.17 -0.1 417,173 + SMa0769 0.53 -0.6 417,174 - SMa0769 0.53 -0.2 417,287 + SMa0769 0.66 -0.2 417,288 - SMa0769 0.66 -0.1 417,288 - SMa0769 0.66 +0.3 417,288 - SMa0769 0.66 -0.1 418,141 - SMa0771 0.78 +0.7 418,195 - -0.1 418,260 - +0.7 418,292 - +0.4 418,292 - +0.1 418,455 + SMa0772 0.20 -0.2 418,456 - SMa0772 0.20 +0.8 418,559 - SMa0772 0.39 +0.9 418,592 - SMa0772 0.45 +0.1 418,592 - SMa0772 0.45 +0.3 418,592 - SMa0772 0.45 +1.5 418,593 + SMa0772 0.45 -0.5 418,676 - SMa0772 0.60 -1.5 418,676 - SMa0772 0.60 +0.6 418,941 - +0.2 419,064 - +0.1 419,102 + +0.5 419,102 + +0.3 419,103 - +1.0 419,133 - +0.1 419,151 + -1.0 419,151 + -0.2 419,152 - +0.7 419,240 + -0.5
Or see this region's nucleotide sequence