Strain Fitness in Sinorhizobium meliloti 1021 around SMa0387

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0384 and SMa0387 are separated by 231 nucleotidesSMa0387 and SMa0389 are separated by 130 nucleotides SMa0384: SMa0384 - TRm3 transposase, at 207,586 to 208,788 SMa0384 SMa0387: SMa0387 - histidinol-phosphate aminotransferase, at 209,020 to 210,132 SMa0387 SMa0389: SMa0389 - short chain alcohol dehydrogenase-related dehydrogenase, at 210,263 to 211,030 SMa0389 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.856 kb on + strandat 208.857 kb on - strandat 208.935 kb on + strandat 208.935 kb on + strandat 208.936 kb on - strandat 209.097 kb on + strandat 209.098 kb on - strandat 209.099 kb on + strandat 209.099 kb on + strandat 209.099 kb on + strandat 209.099 kb on + strandat 209.100 kb on - strandat 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.303 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.307 kb on + strand, within SMa0387at 209.308 kb on - strand, within SMa0387at 209.332 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.409 kb on + strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.410 kb on - strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.461 kb on + strand, within SMa0387at 209.513 kb on + strand, within SMa0387at 209.531 kb on + strand, within SMa0387at 209.532 kb on - strand, within SMa0387at 209.540 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.655 kb on + strand, within SMa0387at 209.754 kb on + strand, within SMa0387at 209.756 kb on + strandat 209.757 kb on - strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.783 kb on + strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 209.784 kb on - strand, within SMa0387at 210.041 kb on + strandat 210.078 kb on + strandat 210.078 kb on + strandat 210.079 kb on - strandat 210.080 kb on + strandat 210.081 kb on - strandat 210.081 kb on - strandat 210.167 kb on + strandat 210.173 kb on + strandat 210.195 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.197 kb on - strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.198 kb on + strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.199 kb on - strandat 210.203 kb on - strandat 210.205 kb on - strandat 210.221 kb on + strandat 210.222 kb on - strandat 210.222 kb on - strandat 210.327 kb on + strandat 210.338 kb on - strandat 210.394 kb on - strand, within SMa0389at 210.394 kb on - strand, within SMa0389at 210.580 kb on - strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.598 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.601 kb on + strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.602 kb on - strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.710 kb on + strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.711 kb on - strand, within SMa0389at 210.863 kb on + strandat 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.864 kb on - strand, within SMa0389at 210.977 kb on + strandat 210.980 kb on - strandat 210.980 kb on - strandat 210.994 kb on + strandat 210.994 kb on + strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 210.995 kb on - strandat 211.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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208,856 + -0.7
208,857 - +0.1
208,935 + +0.2
208,935 + -0.4
208,936 - +1.1
209,097 + -1.2
209,098 - +0.6
209,099 + -0.2
209,099 + +1.0
209,099 + -0.9
209,099 + -0.6
209,100 - +0.7
209,303 + SMa0387 0.25 -1.2
209,303 + SMa0387 0.25 -2.5
209,303 + SMa0387 0.25 -0.2
209,303 + SMa0387 0.25 -0.2
209,303 + SMa0387 0.25 -0.0
209,303 + SMa0387 0.25 -0.4
209,303 + SMa0387 0.25 +0.8
209,307 + SMa0387 0.26 +0.4
209,307 + SMa0387 0.26 +2.8
209,308 - SMa0387 0.26 -0.4
209,332 + SMa0387 0.28 +0.1
209,409 + SMa0387 0.35 -0.4
209,409 + SMa0387 0.35 +0.3
209,410 - SMa0387 0.35 -0.0
209,410 - SMa0387 0.35 -0.0
209,410 - SMa0387 0.35 +2.2
209,410 - SMa0387 0.35 +1.2
209,410 - SMa0387 0.35 -1.6
209,461 + SMa0387 0.40 -0.2
209,461 + SMa0387 0.40 -0.9
209,513 + SMa0387 0.44 +1.0
209,531 + SMa0387 0.46 -2.2
209,532 - SMa0387 0.46 +0.4
209,540 + SMa0387 0.47 -0.0
209,655 + SMa0387 0.57 -0.4
209,655 + SMa0387 0.57 -0.1
209,754 + SMa0387 0.66 -1.5
209,756 + +1.3
209,757 - SMa0387 0.66 +0.7
209,783 + SMa0387 0.69 +1.0
209,783 + SMa0387 0.69 -0.0
209,783 + SMa0387 0.69 -0.6
209,784 - SMa0387 0.69 +2.9
209,784 - SMa0387 0.69 -1.7
209,784 - SMa0387 0.69 +0.4
210,041 + +1.1
210,078 + -1.1
210,078 + -0.4
210,079 - -1.7
210,080 + -0.1
210,081 - -0.6
210,081 - -2.0
210,167 + -1.2
210,173 + -0.5
210,195 - -1.5
210,197 - +0.1
210,197 - -2.1
210,197 - +0.3
210,198 + -0.9
210,198 + +0.5
210,198 + -0.0
210,199 - -0.5
210,199 - -1.1
210,199 - -0.5
210,199 - -0.5
210,199 - -0.5
210,203 - -0.6
210,205 - -0.5
210,221 + +0.4
210,222 - -0.3
210,222 - +0.4
210,327 + +1.2
210,338 - -0.5
210,394 - SMa0389 0.17 +1.2
210,394 - SMa0389 0.17 -0.2
210,580 - SMa0389 0.41 -0.2
210,598 + SMa0389 0.44 +0.9
210,598 + SMa0389 0.44 +0.7
210,601 + SMa0389 0.44 -1.1
210,601 + SMa0389 0.44 +2.3
210,601 + SMa0389 0.44 +0.1
210,601 + SMa0389 0.44 +0.4
210,601 + SMa0389 0.44 -0.4
210,602 - SMa0389 0.44 -0.5
210,602 - SMa0389 0.44 -0.5
210,602 - SMa0389 0.44 -1.1
210,710 + SMa0389 0.58 +0.2
210,710 + SMa0389 0.58 -0.1
210,710 + SMa0389 0.58 -0.5
210,710 + SMa0389 0.58 +0.0
210,711 - SMa0389 0.58 +0.4
210,711 - SMa0389 0.58 -0.8
210,711 - SMa0389 0.58 +0.1
210,863 + +3.3
210,864 - SMa0389 0.78 -0.0
210,864 - SMa0389 0.78 -0.5
210,864 - SMa0389 0.78 -0.7
210,977 + -0.7
210,980 - +0.2
210,980 - -1.0
210,994 + -1.4
210,994 + -0.3
210,995 - -0.4
210,995 - -0.3
210,995 - -0.1
210,995 - -0.3
211,014 - +0.0

Or see this region's nucleotide sequence