Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0163 and SMa0164 overlap by 4 nucleotides SMa0164 and SMa0166 are separated by 21 nucleotides SMa0166 and SMa0168 are separated by 83 nucleotides
SMa0163: SMa0163 - PilQ2 pilus assembly protein, at 89,324 to 90,724
SMa0163
SMa0164: SMa0164 - hypothetical protein, at 90,721 to 91,017
SMa0164
SMa0166: SMa0166 - hypothetical protein, at 91,039 to 91,569
SMa0166
SMa0168: SMa0168 - hypothetical protein, at 91,653 to 92,465
SMa0168
Position (kb) 90
91
92 Strain fitness (log2 ratio) -1
0
1
2 at 89.722 kb on - strand, within SMa0163 at 89.780 kb on - strand, within SMa0163 at 89.839 kb on + strand, within SMa0163 at 89.840 kb on - strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.862 kb on + strand, within SMa0163 at 89.936 kb on + strand, within SMa0163 at 89.992 kb on + strand, within SMa0163 at 90.036 kb on - strand, within SMa0163 at 90.109 kb on - strand, within SMa0163 at 90.188 kb on - strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.197 kb on + strand, within SMa0163 at 90.198 kb on - strand, within SMa0163 at 90.199 kb on + strand, within SMa0163 at 90.320 kb on - strand at 90.491 kb on + strand, within SMa0163 at 90.492 kb on - strand, within SMa0163 at 90.940 kb on + strand, within SMa0164 at 90.940 kb on + strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.941 kb on - strand, within SMa0164 at 90.942 kb on + strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 90.943 kb on - strand, within SMa0164 at 91.016 kb on - strand at 91.016 kb on - strand at 91.016 kb on - strand at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.354 kb on + strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.355 kb on - strand, within SMa0166 at 91.659 kb on - strand at 91.723 kb on - strand at 91.723 kb on - strand at 91.796 kb on + strand, within SMa0168
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 89,722 - SMa0163 0.28 +0.1 89,780 - SMa0163 0.33 -0.7 89,839 + SMa0163 0.37 +0.0 89,840 - SMa0163 0.37 +0.1 89,862 + SMa0163 0.38 -0.4 89,862 + SMa0163 0.38 +0.9 89,862 + SMa0163 0.38 +0.1 89,936 + SMa0163 0.44 -0.1 89,992 + SMa0163 0.48 -0.5 90,036 - SMa0163 0.51 +0.4 90,109 - SMa0163 0.56 -1.1 90,188 - SMa0163 0.62 -0.9 90,197 + SMa0163 0.62 +0.1 90,197 + SMa0163 0.62 +1.9 90,198 - SMa0163 0.62 +0.1 90,199 + SMa0163 0.62 -0.5 90,320 - +0.2 90,491 + SMa0163 0.83 -0.4 90,492 - SMa0163 0.83 +0.1 90,940 + SMa0164 0.74 +1.1 90,940 + SMa0164 0.74 -1.7 90,941 - SMa0164 0.74 -1.0 90,941 - SMa0164 0.74 +0.8 90,942 + SMa0164 0.74 -0.7 90,943 - SMa0164 0.75 -0.8 90,943 - SMa0164 0.75 -1.1 91,016 - +0.2 91,016 - -0.6 91,016 - -0.0 91,354 + SMa0166 0.59 -0.2 91,354 + SMa0166 0.59 -0.6 91,354 + SMa0166 0.59 +0.2 91,354 + SMa0166 0.59 +0.1 91,355 - SMa0166 0.60 -0.2 91,355 - SMa0166 0.60 +0.7 91,659 - -0.7 91,723 - -0.2 91,723 - +0.4 91,796 + SMa0168 0.18 +1.1
Or see this region's nucleotide sequence