Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21590 and SM_b21591 are separated by 17 nucleotides SM_b21591 and SM_b21592 are separated by 145 nucleotides SM_b21592 and SM_b21593 overlap by 4 nucleotides SM_b21593 and SM_b21594 overlap by 4 nucleotides
SM_b21590: SM_b21590 - inner membrane ABC transporter permease YjfF, at 1,130,536 to 1,131,504
_b21590
SM_b21591: SM_b21591 - GntR family transcriptional regulator, at 1,131,522 to 1,132,256
_b21591
SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553
_b21592
SM_b21593: SM_b21593 - sugar uptake ABC transporter permease, at 1,133,550 to 1,134,377
_b21593
SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276
_b21594
Position (kb)
1132
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1131.668 kb on - strand, within SM_b21591 at 1131.870 kb on + strand, within SM_b21591 at 1132.137 kb on - strand, within SM_b21591 at 1132.343 kb on + strand at 1132.343 kb on + strand at 1132.549 kb on - strand, within SM_b21592 at 1132.619 kb on - strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.622 kb on + strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.623 kb on - strand, within SM_b21592 at 1132.662 kb on + strand, within SM_b21592 at 1132.886 kb on + strand, within SM_b21592 at 1132.887 kb on - strand, within SM_b21592 at 1132.985 kb on + strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1132.986 kb on - strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.037 kb on + strand, within SM_b21592 at 1133.038 kb on - strand, within SM_b21592 at 1133.246 kb on - strand, within SM_b21592 at 1133.258 kb on + strand, within SM_b21592 at 1133.259 kb on - strand, within SM_b21592 at 1133.283 kb on + strand, within SM_b21592 at 1133.284 kb on - strand, within SM_b21592 at 1133.292 kb on - strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.300 kb on + strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.301 kb on - strand, within SM_b21592 at 1133.473 kb on + strand at 1133.504 kb on + strand at 1133.514 kb on - strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.630 kb on - strand at 1133.630 kb on - strand at 1133.642 kb on - strand, within SM_b21593 at 1133.651 kb on + strand, within SM_b21593 at 1133.652 kb on - strand, within SM_b21593 at 1133.670 kb on - strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.104 kb on - strand, within SM_b21593 at 1134.175 kb on + strand, within SM_b21593 at 1134.211 kb on + strand, within SM_b21593 at 1134.212 kb on - strand, within SM_b21593 at 1134.287 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.301 kb on + strand at 1134.302 kb on - strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.409 kb on - strand at 1134.477 kb on + strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.508 kb on - strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,131,668 - SM_b21591 0.20 -0.7 1,131,870 + SM_b21591 0.47 -1.2 1,132,137 - SM_b21591 0.84 +0.9 1,132,343 + -1.1 1,132,343 + +0.5 1,132,549 - SM_b21592 0.13 -0.3 1,132,619 - SM_b21592 0.19 +0.3 1,132,622 + SM_b21592 0.19 +0.9 1,132,622 + SM_b21592 0.19 +1.2 1,132,622 + SM_b21592 0.19 +0.0 1,132,623 - SM_b21592 0.19 -0.7 1,132,623 - SM_b21592 0.19 -1.3 1,132,623 - SM_b21592 0.19 -1.4 1,132,662 + SM_b21592 0.23 +2.6 1,132,886 + SM_b21592 0.42 -2.0 1,132,887 - SM_b21592 0.42 -0.3 1,132,985 + SM_b21592 0.51 +0.4 1,132,986 - SM_b21592 0.51 -0.1 1,132,986 - SM_b21592 0.51 +0.4 1,133,037 + SM_b21592 0.55 -0.2 1,133,037 + SM_b21592 0.55 +0.2 1,133,037 + SM_b21592 0.55 +0.1 1,133,038 - SM_b21592 0.55 -0.0 1,133,246 - SM_b21592 0.73 +0.5 1,133,258 + SM_b21592 0.74 -0.4 1,133,259 - SM_b21592 0.74 +0.4 1,133,283 + SM_b21592 0.76 -0.8 1,133,284 - SM_b21592 0.77 -0.1 1,133,292 - SM_b21592 0.77 +0.2 1,133,300 + SM_b21592 0.78 -0.3 1,133,300 + SM_b21592 0.78 +2.0 1,133,301 - SM_b21592 0.78 +0.1 1,133,301 - SM_b21592 0.78 -1.6 1,133,473 + -0.7 1,133,504 + -0.2 1,133,514 - +2.5 1,133,629 + -0.4 1,133,629 + +0.7 1,133,629 + -0.3 1,133,630 - -1.7 1,133,630 - -0.8 1,133,642 - SM_b21593 0.11 +0.1 1,133,651 + SM_b21593 0.12 -0.1 1,133,652 - SM_b21593 0.12 -0.9 1,133,670 - SM_b21593 0.14 -0.3 1,134,103 + SM_b21593 0.67 -1.5 1,134,103 + SM_b21593 0.67 +0.3 1,134,104 - SM_b21593 0.67 -0.5 1,134,175 + SM_b21593 0.75 +0.1 1,134,211 + SM_b21593 0.80 -0.7 1,134,212 - SM_b21593 0.80 +0.4 1,134,287 + SM_b21593 0.89 -2.2 1,134,292 + SM_b21593 0.90 +0.5 1,134,292 + SM_b21593 0.90 -0.1 1,134,301 + +1.2 1,134,302 - -0.0 1,134,316 + +1.8 1,134,316 + +0.4 1,134,316 + +0.1 1,134,316 + -0.0 1,134,317 - +0.9 1,134,317 - +0.9 1,134,317 - +0.1 1,134,408 + -0.1 1,134,408 + -0.6 1,134,409 - -1.6 1,134,477 + SM_b21594 0.11 -1.3 1,134,478 - SM_b21594 0.12 -0.9 1,134,478 - SM_b21594 0.12 -0.8 1,134,508 - SM_b21594 0.15 +0.8 1,134,526 + SM_b21594 0.17 -0.1 1,134,526 + SM_b21594 0.17 -0.5 1,134,527 - SM_b21594 0.17 +0.4 1,134,527 - SM_b21594 0.17 -0.7 1,134,527 - SM_b21594 0.17 +2.2
Or see this region's nucleotide sequence