Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21574 and SM_b21575 are separated by 373 nucleotides SM_b21575 and SM_b21576 are separated by 1 nucleotides SM_b21576 and SM_b21577 are separated by 415 nucleotides
SM_b21574: SM_b21574 - sensor histidine kinase domain-containing protein, at 1,113,430 to 1,113,813
_b21574
SM_b21575: SM_b21575 - transporter, at 1,114,187 to 1,115,392
_b21575
SM_b21576: SM_b21576 - ArsR family transcriptional regulator, at 1,115,394 to 1,115,759
_b21576
SM_b21577: SM_b21577 - hypothetical protein, at 1,116,175 to 1,116,675
_b21577
Position (kb)
1114
1115
1116 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1113.204 kb on - strand at 1113.206 kb on + strand at 1113.207 kb on - strand at 1113.215 kb on + strand at 1113.216 kb on - strand at 1113.268 kb on + strand at 1113.378 kb on - strand at 1113.476 kb on + strand, within SM_b21574 at 1113.476 kb on + strand, within SM_b21574 at 1113.644 kb on - strand, within SM_b21574 at 1113.644 kb on - strand, within SM_b21574 at 1113.751 kb on - strand, within SM_b21574 at 1113.761 kb on + strand, within SM_b21574 at 1113.761 kb on + strand, within SM_b21574 at 1113.762 kb on - strand, within SM_b21574 at 1113.762 kb on - strand, within SM_b21574 at 1113.835 kb on - strand at 1113.857 kb on - strand at 1113.924 kb on - strand at 1113.924 kb on - strand at 1113.924 kb on - strand at 1113.959 kb on + strand at 1113.959 kb on + strand at 1113.960 kb on - strand at 1113.960 kb on - strand at 1114.017 kb on + strand at 1114.085 kb on + strand at 1114.086 kb on - strand at 1114.086 kb on - strand at 1114.086 kb on - strand at 1114.089 kb on + strand at 1114.089 kb on + strand at 1114.089 kb on + strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.090 kb on - strand at 1114.684 kb on + strand, within SM_b21575 at 1114.685 kb on - strand, within SM_b21575 at 1114.685 kb on - strand, within SM_b21575 at 1114.694 kb on + strand, within SM_b21575 at 1114.694 kb on + strand, within SM_b21575 at 1114.719 kb on - strand, within SM_b21575 at 1114.887 kb on + strand, within SM_b21575 at 1114.887 kb on + strand, within SM_b21575 at 1114.896 kb on + strand, within SM_b21575 at 1114.983 kb on + strand, within SM_b21575 at 1114.983 kb on + strand, within SM_b21575 at 1114.984 kb on - strand, within SM_b21575 at 1115.047 kb on - strand, within SM_b21575 at 1115.081 kb on + strand, within SM_b21575 at 1115.081 kb on + strand, within SM_b21575 at 1115.081 kb on + strand, within SM_b21575 at 1115.082 kb on - strand, within SM_b21575 at 1115.123 kb on + strand, within SM_b21575 at 1115.124 kb on - strand, within SM_b21575 at 1115.320 kb on - strand at 1115.320 kb on - strand at 1115.320 kb on - strand at 1115.392 kb on + strand at 1115.392 kb on + strand at 1115.393 kb on - strand at 1115.466 kb on + strand, within SM_b21576 at 1115.466 kb on + strand, within SM_b21576 at 1115.466 kb on + strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.531 kb on - strand, within SM_b21576 at 1115.543 kb on - strand, within SM_b21576 at 1115.543 kb on - strand, within SM_b21576 at 1115.920 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.931 kb on - strand at 1115.957 kb on + strand at 1115.958 kb on - strand at 1116.177 kb on - strand at 1116.295 kb on + strand, within SM_b21577 at 1116.372 kb on + strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,113,204 - -0.4 1,113,206 + -0.7 1,113,207 - -0.2 1,113,215 + +1.0 1,113,216 - -0.6 1,113,268 + -0.7 1,113,378 - -0.6 1,113,476 + SM_b21574 0.12 -0.2 1,113,476 + SM_b21574 0.12 -0.1 1,113,644 - SM_b21574 0.56 -1.5 1,113,644 - SM_b21574 0.56 +1.0 1,113,751 - SM_b21574 0.84 -0.1 1,113,761 + SM_b21574 0.86 -0.8 1,113,761 + SM_b21574 0.86 -0.6 1,113,762 - SM_b21574 0.86 -0.7 1,113,762 - SM_b21574 0.86 -2.6 1,113,835 - +0.2 1,113,857 - -0.5 1,113,924 - +0.1 1,113,924 - +0.1 1,113,924 - -0.8 1,113,959 + -0.7 1,113,959 + +0.1 1,113,960 - +0.1 1,113,960 - -0.0 1,114,017 + -2.3 1,114,085 + +0.1 1,114,086 - +0.1 1,114,086 - -0.8 1,114,086 - -0.2 1,114,089 + +0.2 1,114,089 + +0.7 1,114,089 + -0.2 1,114,090 - -0.0 1,114,090 - +0.1 1,114,090 - +0.3 1,114,090 - -1.9 1,114,090 - -0.3 1,114,090 - +0.8 1,114,090 - +0.1 1,114,684 + SM_b21575 0.41 +0.3 1,114,685 - SM_b21575 0.41 +0.9 1,114,685 - SM_b21575 0.41 -1.2 1,114,694 + SM_b21575 0.42 +0.4 1,114,694 + SM_b21575 0.42 +0.0 1,114,719 - SM_b21575 0.44 +0.9 1,114,887 + SM_b21575 0.58 +0.3 1,114,887 + SM_b21575 0.58 +0.1 1,114,896 + SM_b21575 0.59 +0.1 1,114,983 + SM_b21575 0.66 -0.3 1,114,983 + SM_b21575 0.66 -0.6 1,114,984 - SM_b21575 0.66 +1.4 1,115,047 - SM_b21575 0.71 +0.3 1,115,081 + SM_b21575 0.74 +0.7 1,115,081 + SM_b21575 0.74 -0.9 1,115,081 + SM_b21575 0.74 +0.5 1,115,082 - SM_b21575 0.74 +0.4 1,115,123 + SM_b21575 0.78 +0.3 1,115,124 - SM_b21575 0.78 +1.1 1,115,320 - +1.9 1,115,320 - +1.5 1,115,320 - +0.1 1,115,392 + -0.2 1,115,392 + -0.1 1,115,393 - +0.7 1,115,466 + SM_b21576 0.20 +0.2 1,115,466 + SM_b21576 0.20 +0.7 1,115,466 + SM_b21576 0.20 -0.4 1,115,467 - SM_b21576 0.20 -0.2 1,115,467 - SM_b21576 0.20 +0.8 1,115,467 - SM_b21576 0.20 -0.1 1,115,467 - SM_b21576 0.20 +0.2 1,115,467 - SM_b21576 0.20 -0.0 1,115,531 - SM_b21576 0.37 +2.0 1,115,543 - SM_b21576 0.41 -1.0 1,115,543 - SM_b21576 0.41 +1.3 1,115,920 + -0.7 1,115,930 + +1.0 1,115,930 + -0.2 1,115,930 + +0.1 1,115,930 + +0.4 1,115,930 + -0.2 1,115,931 - -0.2 1,115,957 + +1.2 1,115,958 - +0.4 1,116,177 - +0.6 1,116,295 + SM_b21577 0.24 +1.2 1,116,372 + SM_b21577 0.39 +0.5 1,116,373 - SM_b21577 0.40 -1.0 1,116,373 - SM_b21577 0.40 -0.1
Or see this region's nucleotide sequence