Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21424 and SM_b21425 are separated by 46 nucleotides SM_b21425 and SM_b21426 are separated by 1 nucleotides SM_b21426 and SM_b21427 overlap by 1 nucleotides SM_b21427 and SM_b21428 are separated by 155 nucleotides
SM_b21424: SM_b21424 - esterase or acylase, at 1,355,223 to 1,356,959
_b21424
SM_b21425: SM_b21425 - hypothetical protein, at 1,357,006 to 1,357,782
_b21425
SM_b21426: SM_b21426 - sugar nucleotide oxidoreductaseepimerase, at 1,357,784 to 1,358,626
_b21426
SM_b21427: SM_b21427 - acetyltransferase, at 1,358,626 to 1,359,114
_b21427
SM_b21428: SM_b21428 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,359,270 to 1,359,833
_b21428
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1356.921 kb on + strand at 1356.921 kb on + strand at 1356.922 kb on - strand at 1356.957 kb on + strand at 1356.958 kb on - strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.962 kb on + strand at 1356.963 kb on - strand at 1356.963 kb on - strand at 1357.100 kb on + strand, within SM_b21425 at 1357.100 kb on + strand, within SM_b21425 at 1357.202 kb on + strand, within SM_b21425 at 1357.229 kb on + strand, within SM_b21425 at 1357.263 kb on + strand, within SM_b21425 at 1357.263 kb on + strand, within SM_b21425 at 1357.264 kb on - strand, within SM_b21425 at 1357.264 kb on - strand, within SM_b21425 at 1357.282 kb on + strand, within SM_b21425 at 1357.282 kb on + strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.283 kb on - strand, within SM_b21425 at 1357.656 kb on + strand, within SM_b21425 at 1357.656 kb on + strand, within SM_b21425 at 1357.657 kb on - strand, within SM_b21425 at 1357.657 kb on - strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.664 kb on + strand, within SM_b21425 at 1357.678 kb on - strand, within SM_b21425 at 1357.865 kb on + strand at 1357.958 kb on + strand, within SM_b21426 at 1357.959 kb on - strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.034 kb on + strand, within SM_b21426 at 1358.035 kb on - strand, within SM_b21426 at 1358.099 kb on - strand, within SM_b21426 at 1358.100 kb on + strand, within SM_b21426 at 1358.100 kb on + strand, within SM_b21426 at 1358.101 kb on - strand, within SM_b21426 at 1358.101 kb on - strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.289 kb on + strand, within SM_b21426 at 1358.341 kb on + strand, within SM_b21426 at 1358.342 kb on - strand, within SM_b21426 at 1358.359 kb on - strand, within SM_b21426 at 1358.379 kb on + strand, within SM_b21426 at 1358.379 kb on + strand at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.380 kb on - strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.490 kb on + strand, within SM_b21426 at 1358.527 kb on + strand, within SM_b21426 at 1358.527 kb on + strand, within SM_b21426 at 1358.875 kb on - strand, within SM_b21427 at 1358.905 kb on + strand, within SM_b21427 at 1358.906 kb on - strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.927 kb on + strand, within SM_b21427 at 1358.928 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1358.952 kb on - strand, within SM_b21427 at 1359.196 kb on + strand at 1359.196 kb on + strand at 1359.197 kb on - strand at 1359.227 kb on + strand at 1359.227 kb on + strand at 1359.228 kb on - strand at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.585 kb on + strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428 at 1359.586 kb on - strand, within SM_b21428
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,356,921 + +0.7 1,356,921 + -1.8 1,356,922 - +0.2 1,356,957 + -0.3 1,356,958 - +0.8 1,356,962 + -0.2 1,356,962 + +0.4 1,356,962 + -0.6 1,356,962 + -0.4 1,356,963 - -0.2 1,356,963 - -0.6 1,357,100 + SM_b21425 0.12 +0.3 1,357,100 + SM_b21425 0.12 +0.4 1,357,202 + SM_b21425 0.25 +0.2 1,357,229 + SM_b21425 0.29 +0.2 1,357,263 + SM_b21425 0.33 +1.6 1,357,263 + SM_b21425 0.33 -0.1 1,357,264 - SM_b21425 0.33 +1.8 1,357,264 - SM_b21425 0.33 -0.0 1,357,282 + SM_b21425 0.36 -0.0 1,357,282 + SM_b21425 0.36 +1.4 1,357,283 - SM_b21425 0.36 +0.3 1,357,283 - SM_b21425 0.36 +0.6 1,357,283 - SM_b21425 0.36 +0.4 1,357,283 - SM_b21425 0.36 +1.3 1,357,283 - SM_b21425 0.36 +0.6 1,357,656 + SM_b21425 0.84 +0.3 1,357,656 + SM_b21425 0.84 +1.0 1,357,657 - SM_b21425 0.84 +2.1 1,357,657 - SM_b21425 0.84 +0.4 1,357,664 + SM_b21425 0.85 +0.2 1,357,664 + SM_b21425 0.85 -0.2 1,357,664 + SM_b21425 0.85 +0.5 1,357,678 - SM_b21425 0.86 -0.2 1,357,865 + +0.8 1,357,958 + SM_b21426 0.21 +0.6 1,357,959 - SM_b21426 0.21 +0.9 1,358,034 + SM_b21426 0.30 +0.5 1,358,034 + SM_b21426 0.30 +0.8 1,358,034 + SM_b21426 0.30 +0.5 1,358,035 - SM_b21426 0.30 +0.4 1,358,099 - SM_b21426 0.37 -0.0 1,358,100 + SM_b21426 0.37 +0.6 1,358,100 + SM_b21426 0.37 +0.8 1,358,101 - SM_b21426 0.38 +0.6 1,358,101 - SM_b21426 0.38 +0.5 1,358,289 + SM_b21426 0.60 +0.3 1,358,289 + SM_b21426 0.60 +1.3 1,358,289 + SM_b21426 0.60 -0.3 1,358,341 + SM_b21426 0.66 +0.0 1,358,342 - SM_b21426 0.66 +1.1 1,358,359 - SM_b21426 0.68 -0.0 1,358,379 + SM_b21426 0.71 +0.2 1,358,379 + +1.0 1,358,380 - SM_b21426 0.71 +0.4 1,358,380 - SM_b21426 0.71 +0.8 1,358,380 - SM_b21426 0.71 +0.7 1,358,380 - SM_b21426 0.71 +1.9 1,358,490 + SM_b21426 0.84 +0.6 1,358,490 + SM_b21426 0.84 +1.0 1,358,490 + SM_b21426 0.84 +0.2 1,358,490 + SM_b21426 0.84 -0.3 1,358,490 + SM_b21426 0.84 +1.1 1,358,527 + SM_b21426 0.88 -1.3 1,358,527 + SM_b21426 0.88 -0.5 1,358,875 - SM_b21427 0.51 +0.1 1,358,905 + SM_b21427 0.57 +0.3 1,358,906 - SM_b21427 0.57 +0.4 1,358,927 + SM_b21427 0.62 +0.3 1,358,927 + SM_b21427 0.62 -0.1 1,358,927 + SM_b21427 0.62 +0.1 1,358,928 - SM_b21427 0.62 +2.4 1,358,952 - SM_b21427 0.67 +1.8 1,358,952 - SM_b21427 0.67 -0.9 1,358,952 - SM_b21427 0.67 -0.2 1,359,196 + +1.1 1,359,196 + +1.0 1,359,197 - +0.3 1,359,227 + +1.0 1,359,227 + +0.6 1,359,228 - +0.3 1,359,585 + SM_b21428 0.56 +0.7 1,359,585 + SM_b21428 0.56 +0.7 1,359,585 + SM_b21428 0.56 -0.9 1,359,585 + SM_b21428 0.56 -1.2 1,359,585 + SM_b21428 0.56 +0.4 1,359,586 - SM_b21428 0.56 +0.2 1,359,586 - SM_b21428 0.56 -0.5 1,359,586 - SM_b21428 0.56 +0.7 1,359,586 - SM_b21428 0.56 +0.6
Or see this region's nucleotide sequence