Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21380 and SM_b21381 are separated by 27 nucleotides SM_b21381 and SM_b21382 are separated by 12 nucleotides SM_b21382 and SM_b21383 are separated by 236 nucleotides
SM_b21380: SM_b21380 - catechol 1,2-dioxygenase, at 1,044,639 to 1,045,232
_b21380
SM_b21381: SM_b21381 - hypothetical protein, at 1,045,260 to 1,045,598
_b21381
SM_b21382: SM_b21382 - hypothetical protein, at 1,045,611 to 1,046,132
_b21382
SM_b21383: SM_b21383 - SDR family dehydrogenase, at 1,046,369 to 1,047,259
_b21383
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1044.805 kb on + strand at 1044.805 kb on + strand, within SM_b21380 at 1044.805 kb on + strand, within SM_b21380 at 1044.913 kb on + strand, within SM_b21380 at 1044.914 kb on - strand, within SM_b21380 at 1044.914 kb on - strand, within SM_b21380 at 1045.063 kb on + strand, within SM_b21380 at 1045.064 kb on - strand, within SM_b21380 at 1045.064 kb on - strand, within SM_b21380 at 1045.178 kb on + strand at 1045.178 kb on + strand at 1045.206 kb on + strand at 1045.206 kb on + strand at 1045.256 kb on + strand at 1045.256 kb on + strand at 1045.256 kb on + strand at 1045.258 kb on + strand at 1045.258 kb on + strand at 1045.258 kb on + strand at 1045.258 kb on + strand at 1045.259 kb on - strand at 1045.259 kb on - strand at 1045.259 kb on - strand at 1045.262 kb on - strand at 1045.262 kb on - strand at 1045.262 kb on - strand at 1045.281 kb on + strand at 1045.282 kb on - strand at 1045.282 kb on - strand at 1045.342 kb on + strand, within SM_b21381 at 1045.342 kb on + strand, within SM_b21381 at 1045.342 kb on + strand, within SM_b21381 at 1045.342 kb on + strand, within SM_b21381 at 1045.343 kb on - strand, within SM_b21381 at 1045.343 kb on - strand, within SM_b21381 at 1045.343 kb on - strand, within SM_b21381 at 1045.343 kb on - strand, within SM_b21381 at 1045.544 kb on + strand, within SM_b21381 at 1045.545 kb on - strand, within SM_b21381 at 1045.545 kb on - strand, within SM_b21381 at 1045.628 kb on + strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.629 kb on - strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.630 kb on + strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.631 kb on - strand at 1045.647 kb on - strand at 1045.774 kb on + strand, within SM_b21382 at 1045.774 kb on + strand, within SM_b21382 at 1045.774 kb on + strand, within SM_b21382 at 1045.775 kb on - strand, within SM_b21382 at 1045.775 kb on - strand, within SM_b21382 at 1045.923 kb on - strand, within SM_b21382 at 1045.949 kb on - strand, within SM_b21382 at 1045.996 kb on + strand, within SM_b21382 at 1046.149 kb on + strand at 1046.325 kb on + strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.326 kb on - strand at 1046.370 kb on + strand at 1046.370 kb on + strand at 1046.370 kb on + strand at 1046.392 kb on - strand at 1046.392 kb on - strand at 1046.393 kb on + strand at 1046.393 kb on + strand at 1046.394 kb on - strand at 1046.620 kb on - strand, within SM_b21383 at 1046.650 kb on - strand, within SM_b21383 at 1046.659 kb on - strand, within SM_b21383 at 1046.681 kb on - strand, within SM_b21383 at 1046.703 kb on - strand, within SM_b21383 at 1046.936 kb on - strand, within SM_b21383 at 1047.005 kb on + strand, within SM_b21383 at 1047.032 kb on + strand, within SM_b21383 at 1047.033 kb on - strand, within SM_b21383 at 1047.033 kb on - strand, within SM_b21383 at 1047.056 kb on + strand, within SM_b21383 at 1047.056 kb on + strand, within SM_b21383 at 1047.057 kb on - strand, within SM_b21383 at 1047.057 kb on - strand, within SM_b21383
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,044,805 + +3.2 1,044,805 + SM_b21380 0.28 +0.0 1,044,805 + SM_b21380 0.28 +0.9 1,044,913 + SM_b21380 0.46 +0.6 1,044,914 - SM_b21380 0.46 +0.1 1,044,914 - SM_b21380 0.46 +1.8 1,045,063 + SM_b21380 0.71 +1.0 1,045,064 - SM_b21380 0.72 +1.1 1,045,064 - SM_b21380 0.72 -0.1 1,045,178 + +0.2 1,045,178 + -0.6 1,045,206 + +0.1 1,045,206 + +0.4 1,045,256 + -0.4 1,045,256 + -0.3 1,045,256 + +0.2 1,045,258 + +0.2 1,045,258 + -0.0 1,045,258 + -0.1 1,045,258 + +0.4 1,045,259 - +0.2 1,045,259 - -1.3 1,045,259 - +0.6 1,045,262 - +0.6 1,045,262 - -1.4 1,045,262 - -0.7 1,045,281 + -0.7 1,045,282 - -0.1 1,045,282 - +0.6 1,045,342 + SM_b21381 0.24 -0.1 1,045,342 + SM_b21381 0.24 +0.1 1,045,342 + SM_b21381 0.24 +0.2 1,045,342 + SM_b21381 0.24 -0.2 1,045,343 - SM_b21381 0.24 -0.2 1,045,343 - SM_b21381 0.24 +0.4 1,045,343 - SM_b21381 0.24 -0.8 1,045,343 - SM_b21381 0.24 -0.0 1,045,544 + SM_b21381 0.84 +0.5 1,045,545 - SM_b21381 0.84 +0.1 1,045,545 - SM_b21381 0.84 +0.5 1,045,628 + +0.0 1,045,629 - +1.1 1,045,629 - -0.1 1,045,629 - +0.2 1,045,629 - -0.1 1,045,630 + -1.2 1,045,630 + -0.6 1,045,630 + -0.7 1,045,630 + +0.5 1,045,630 + -0.2 1,045,630 + -0.2 1,045,630 + +0.6 1,045,631 - -1.2 1,045,631 - +0.8 1,045,631 - -0.2 1,045,631 - -0.5 1,045,631 - +1.1 1,045,631 - -1.5 1,045,631 - +1.2 1,045,647 - -0.1 1,045,774 + SM_b21382 0.31 -0.8 1,045,774 + SM_b21382 0.31 -0.2 1,045,774 + SM_b21382 0.31 -0.8 1,045,775 - SM_b21382 0.31 +0.1 1,045,775 - SM_b21382 0.31 -2.4 1,045,923 - SM_b21382 0.60 -0.0 1,045,949 - SM_b21382 0.65 +0.8 1,045,996 + SM_b21382 0.74 +0.0 1,046,149 + +0.1 1,046,325 + -0.1 1,046,326 - +0.2 1,046,326 - -0.4 1,046,326 - +0.2 1,046,326 - -0.4 1,046,370 + +0.5 1,046,370 + -0.2 1,046,370 + +1.0 1,046,392 - -0.7 1,046,392 - -0.3 1,046,393 + -0.1 1,046,393 + +0.1 1,046,394 - -1.2 1,046,620 - SM_b21383 0.28 -1.3 1,046,650 - SM_b21383 0.32 +0.1 1,046,659 - SM_b21383 0.33 +3.2 1,046,681 - SM_b21383 0.35 +0.4 1,046,703 - SM_b21383 0.37 -0.1 1,046,936 - SM_b21383 0.64 +1.4 1,047,005 + SM_b21383 0.71 +0.3 1,047,032 + SM_b21383 0.74 -0.0 1,047,033 - SM_b21383 0.75 -1.9 1,047,033 - SM_b21383 0.75 +0.0 1,047,056 + SM_b21383 0.77 -0.2 1,047,056 + SM_b21383 0.77 +0.1 1,047,057 - SM_b21383 0.77 +0.7 1,047,057 - SM_b21383 0.77 +0.1
Or see this region's nucleotide sequence