Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21382

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21380 and SM_b21381 are separated by 27 nucleotidesSM_b21381 and SM_b21382 are separated by 12 nucleotidesSM_b21382 and SM_b21383 are separated by 236 nucleotides SM_b21380: SM_b21380 - catechol 1,2-dioxygenase, at 1,044,639 to 1,045,232 _b21380 SM_b21381: SM_b21381 - hypothetical protein, at 1,045,260 to 1,045,598 _b21381 SM_b21382: SM_b21382 - hypothetical protein, at 1,045,611 to 1,046,132 _b21382 SM_b21383: SM_b21383 - SDR family dehydrogenase, at 1,046,369 to 1,047,259 _b21383 Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1044.805 kb on + strandat 1044.805 kb on + strand, within SM_b21380at 1044.805 kb on + strand, within SM_b21380at 1044.913 kb on + strand, within SM_b21380at 1044.914 kb on - strand, within SM_b21380at 1044.914 kb on - strand, within SM_b21380at 1045.063 kb on + strand, within SM_b21380at 1045.064 kb on - strand, within SM_b21380at 1045.064 kb on - strand, within SM_b21380at 1045.178 kb on + strandat 1045.178 kb on + strandat 1045.206 kb on + strandat 1045.206 kb on + strandat 1045.256 kb on + strandat 1045.256 kb on + strandat 1045.256 kb on + strandat 1045.258 kb on + strandat 1045.258 kb on + strandat 1045.258 kb on + strandat 1045.258 kb on + strandat 1045.259 kb on - strandat 1045.259 kb on - strandat 1045.259 kb on - strandat 1045.262 kb on - strandat 1045.262 kb on - strandat 1045.262 kb on - strandat 1045.281 kb on + strandat 1045.282 kb on - strandat 1045.282 kb on - strandat 1045.342 kb on + strand, within SM_b21381at 1045.342 kb on + strand, within SM_b21381at 1045.342 kb on + strand, within SM_b21381at 1045.342 kb on + strand, within SM_b21381at 1045.343 kb on - strand, within SM_b21381at 1045.343 kb on - strand, within SM_b21381at 1045.343 kb on - strand, within SM_b21381at 1045.343 kb on - strand, within SM_b21381at 1045.544 kb on + strand, within SM_b21381at 1045.545 kb on - strand, within SM_b21381at 1045.545 kb on - strand, within SM_b21381at 1045.628 kb on + strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.629 kb on - strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.630 kb on + strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.631 kb on - strandat 1045.647 kb on - strandat 1045.774 kb on + strand, within SM_b21382at 1045.774 kb on + strand, within SM_b21382at 1045.774 kb on + strand, within SM_b21382at 1045.775 kb on - strand, within SM_b21382at 1045.775 kb on - strand, within SM_b21382at 1045.923 kb on - strand, within SM_b21382at 1045.949 kb on - strand, within SM_b21382at 1045.996 kb on + strand, within SM_b21382at 1046.149 kb on + strandat 1046.325 kb on + strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.326 kb on - strandat 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.370 kb on + strandat 1046.392 kb on - strandat 1046.392 kb on - strandat 1046.393 kb on + strandat 1046.393 kb on + strandat 1046.394 kb on - strandat 1046.620 kb on - strand, within SM_b21383at 1046.650 kb on - strand, within SM_b21383at 1046.659 kb on - strand, within SM_b21383at 1046.681 kb on - strand, within SM_b21383at 1046.703 kb on - strand, within SM_b21383at 1046.936 kb on - strand, within SM_b21383at 1047.005 kb on + strand, within SM_b21383at 1047.032 kb on + strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.033 kb on - strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.056 kb on + strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383at 1047.057 kb on - strand, within SM_b21383

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,044,805 + +3.2
1,044,805 + SM_b21380 0.28 +0.0
1,044,805 + SM_b21380 0.28 +0.9
1,044,913 + SM_b21380 0.46 +0.6
1,044,914 - SM_b21380 0.46 +0.1
1,044,914 - SM_b21380 0.46 +1.8
1,045,063 + SM_b21380 0.71 +1.0
1,045,064 - SM_b21380 0.72 +1.1
1,045,064 - SM_b21380 0.72 -0.1
1,045,178 + +0.2
1,045,178 + -0.6
1,045,206 + +0.1
1,045,206 + +0.4
1,045,256 + -0.4
1,045,256 + -0.3
1,045,256 + +0.2
1,045,258 + +0.2
1,045,258 + -0.0
1,045,258 + -0.1
1,045,258 + +0.4
1,045,259 - +0.2
1,045,259 - -1.3
1,045,259 - +0.6
1,045,262 - +0.6
1,045,262 - -1.4
1,045,262 - -0.7
1,045,281 + -0.7
1,045,282 - -0.1
1,045,282 - +0.6
1,045,342 + SM_b21381 0.24 -0.1
1,045,342 + SM_b21381 0.24 +0.1
1,045,342 + SM_b21381 0.24 +0.2
1,045,342 + SM_b21381 0.24 -0.2
1,045,343 - SM_b21381 0.24 -0.2
1,045,343 - SM_b21381 0.24 +0.4
1,045,343 - SM_b21381 0.24 -0.8
1,045,343 - SM_b21381 0.24 -0.0
1,045,544 + SM_b21381 0.84 +0.5
1,045,545 - SM_b21381 0.84 +0.1
1,045,545 - SM_b21381 0.84 +0.5
1,045,628 + +0.0
1,045,629 - +1.1
1,045,629 - -0.1
1,045,629 - +0.2
1,045,629 - -0.1
1,045,630 + -1.2
1,045,630 + -0.6
1,045,630 + -0.7
1,045,630 + +0.5
1,045,630 + -0.2
1,045,630 + -0.2
1,045,630 + +0.6
1,045,631 - -1.2
1,045,631 - +0.8
1,045,631 - -0.2
1,045,631 - -0.5
1,045,631 - +1.1
1,045,631 - -1.5
1,045,631 - +1.2
1,045,647 - -0.1
1,045,774 + SM_b21382 0.31 -0.8
1,045,774 + SM_b21382 0.31 -0.2
1,045,774 + SM_b21382 0.31 -0.8
1,045,775 - SM_b21382 0.31 +0.1
1,045,775 - SM_b21382 0.31 -2.4
1,045,923 - SM_b21382 0.60 -0.0
1,045,949 - SM_b21382 0.65 +0.8
1,045,996 + SM_b21382 0.74 +0.0
1,046,149 + +0.1
1,046,325 + -0.1
1,046,326 - +0.2
1,046,326 - -0.4
1,046,326 - +0.2
1,046,326 - -0.4
1,046,370 + +0.5
1,046,370 + -0.2
1,046,370 + +1.0
1,046,392 - -0.7
1,046,392 - -0.3
1,046,393 + -0.1
1,046,393 + +0.1
1,046,394 - -1.2
1,046,620 - SM_b21383 0.28 -1.3
1,046,650 - SM_b21383 0.32 +0.1
1,046,659 - SM_b21383 0.33 +3.2
1,046,681 - SM_b21383 0.35 +0.4
1,046,703 - SM_b21383 0.37 -0.1
1,046,936 - SM_b21383 0.64 +1.4
1,047,005 + SM_b21383 0.71 +0.3
1,047,032 + SM_b21383 0.74 -0.0
1,047,033 - SM_b21383 0.75 -1.9
1,047,033 - SM_b21383 0.75 +0.0
1,047,056 + SM_b21383 0.77 -0.2
1,047,056 + SM_b21383 0.77 +0.1
1,047,057 - SM_b21383 0.77 +0.7
1,047,057 - SM_b21383 0.77 +0.1

Or see this region's nucleotide sequence