Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21367

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21365 and SM_b21669 overlap by 19 nucleotidesSM_b21669 and SM_b21366 are separated by 40 nucleotidesSM_b21366 and SM_b21367 overlap by 10 nucleotidesSM_b21367 and SM_b21368 overlap by 4 nucleotidesSM_b21368 and SM_b21369 are separated by 3 nucleotides SM_b21365: SM_b21365 - hypothetical protein, at 1,029,186 to 1,029,638 _b21365 SM_b21669: SM_b21669 - hypothetical protein, at 1,029,620 to 1,029,847 _b21669 SM_b21366: SM_b21366 - hypothetical protein, at 1,029,888 to 1,030,469 _b21366 SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584 _b21367 SM_b21368: SM_b21368 - cytochrome c oxidase subunit II, at 1,031,581 to 1,032,564 _b21368 SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641 _b21369 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2at 1029.554 kb on + strand, within SM_b21365at 1029.682 kb on + strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.683 kb on - strand, within SM_b21669at 1029.908 kb on + strandat 1029.908 kb on + strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.909 kb on - strandat 1029.920 kb on + strandat 1029.921 kb on - strandat 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.218 kb on + strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.219 kb on - strand, within SM_b21366at 1030.346 kb on + strand, within SM_b21366at 1030.347 kb on - strand, within SM_b21366at 1030.374 kb on + strand, within SM_b21366at 1030.374 kb on + strand, within SM_b21366at 1030.375 kb on - strand, within SM_b21366at 1030.562 kb on + strandat 1030.563 kb on - strandat 1030.563 kb on - strandat 1030.597 kb on + strand, within SM_b21367at 1030.726 kb on - strand, within SM_b21367at 1030.726 kb on - strand, within SM_b21367at 1030.755 kb on + strand, within SM_b21367at 1030.756 kb on - strand, within SM_b21367at 1030.862 kb on + strand, within SM_b21367at 1030.862 kb on + strand, within SM_b21367at 1030.862 kb on + strand, within SM_b21367at 1030.862 kb on + strand, within SM_b21367at 1030.889 kb on - strand, within SM_b21367at 1030.889 kb on - strand, within SM_b21367at 1030.996 kb on + strand, within SM_b21367at 1031.114 kb on + strand, within SM_b21367at 1031.114 kb on + strand, within SM_b21367at 1031.115 kb on - strand, within SM_b21367at 1031.115 kb on - strand, within SM_b21367at 1031.138 kb on + strand, within SM_b21367at 1031.138 kb on + strand, within SM_b21367at 1031.139 kb on - strand, within SM_b21367at 1031.225 kb on + strand, within SM_b21367at 1031.225 kb on + strand, within SM_b21367at 1031.226 kb on - strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.409 kb on + strand, within SM_b21367at 1031.410 kb on - strand, within SM_b21367at 1031.410 kb on - strand, within SM_b21367at 1031.421 kb on + strand, within SM_b21367at 1031.422 kb on - strand, within SM_b21367at 1031.460 kb on - strand, within SM_b21367at 1031.864 kb on - strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.872 kb on + strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.873 kb on - strand, within SM_b21368at 1031.877 kb on + strand, within SM_b21368at 1031.877 kb on + strand, within SM_b21368at 1031.878 kb on - strand, within SM_b21368at 1031.878 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1031.963 kb on - strand, within SM_b21368at 1032.057 kb on + strand, within SM_b21368at 1032.057 kb on + strand, within SM_b21368at 1032.058 kb on - strand, within SM_b21368at 1032.175 kb on + strand, within SM_b21368at 1032.208 kb on + strand, within SM_b21368at 1032.366 kb on + strand, within SM_b21368at 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.567 kb on + strandat 1032.568 kb on - strandat 1032.568 kb on - strandat 1032.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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1,029,554 + SM_b21365 0.81 -1.0
1,029,682 + SM_b21669 0.27 +1.4
1,029,683 - SM_b21669 0.28 +0.9
1,029,683 - SM_b21669 0.28 +0.4
1,029,683 - SM_b21669 0.28 +0.9
1,029,908 + +0.3
1,029,908 + +0.5
1,029,909 - -0.0
1,029,909 - -0.6
1,029,909 - -0.5
1,029,909 - -0.6
1,029,909 - -1.4
1,029,920 + +0.2
1,029,921 - +1.2
1,030,218 + SM_b21366 0.57 -0.3
1,030,218 + SM_b21366 0.57 +0.8
1,030,218 + SM_b21366 0.57 -0.2
1,030,218 + SM_b21366 0.57 -0.5
1,030,219 - SM_b21366 0.57 +1.2
1,030,219 - SM_b21366 0.57 +0.3
1,030,219 - SM_b21366 0.57 -0.5
1,030,219 - SM_b21366 0.57 +0.4
1,030,346 + SM_b21366 0.79 -0.1
1,030,347 - SM_b21366 0.79 -0.5
1,030,374 + SM_b21366 0.84 -1.9
1,030,374 + SM_b21366 0.84 -0.3
1,030,375 - SM_b21366 0.84 -0.4
1,030,562 + -0.0
1,030,563 - -0.3
1,030,563 - +0.8
1,030,597 + SM_b21367 0.12 -0.1
1,030,726 - SM_b21367 0.24 +1.6
1,030,726 - SM_b21367 0.24 +0.1
1,030,755 + SM_b21367 0.26 +0.0
1,030,756 - SM_b21367 0.26 -0.0
1,030,862 + SM_b21367 0.36 -0.6
1,030,862 + SM_b21367 0.36 -2.4
1,030,862 + SM_b21367 0.36 -0.6
1,030,862 + SM_b21367 0.36 -0.1
1,030,889 - SM_b21367 0.38 +0.2
1,030,889 - SM_b21367 0.38 -0.6
1,030,996 + SM_b21367 0.48 -0.1
1,031,114 + SM_b21367 0.58 -0.2
1,031,114 + SM_b21367 0.58 -1.9
1,031,115 - SM_b21367 0.58 -0.7
1,031,115 - SM_b21367 0.58 -0.4
1,031,138 + SM_b21367 0.60 +0.5
1,031,138 + SM_b21367 0.60 -1.9
1,031,139 - SM_b21367 0.60 -0.3
1,031,225 + SM_b21367 0.68 -0.6
1,031,225 + SM_b21367 0.68 +0.2
1,031,226 - SM_b21367 0.68 -0.2
1,031,409 + SM_b21367 0.84 +0.4
1,031,409 + SM_b21367 0.84 -0.9
1,031,409 + SM_b21367 0.84 +0.6
1,031,409 + SM_b21367 0.84 -0.9
1,031,409 + SM_b21367 0.84 -0.6
1,031,409 + SM_b21367 0.84 +0.0
1,031,410 - SM_b21367 0.84 +2.7
1,031,410 - SM_b21367 0.84 -0.5
1,031,421 + SM_b21367 0.85 +0.2
1,031,422 - SM_b21367 0.86 -0.4
1,031,460 - SM_b21367 0.89 -0.6
1,031,864 - SM_b21368 0.29 -0.8
1,031,872 + SM_b21368 0.30 +0.2
1,031,872 + SM_b21368 0.30 +0.1
1,031,872 + SM_b21368 0.30 +0.3
1,031,872 + SM_b21368 0.30 -1.2
1,031,873 - SM_b21368 0.30 -0.8
1,031,873 - SM_b21368 0.30 +0.5
1,031,873 - SM_b21368 0.30 +0.4
1,031,873 - SM_b21368 0.30 -0.5
1,031,873 - SM_b21368 0.30 +0.5
1,031,873 - SM_b21368 0.30 -0.2
1,031,873 - SM_b21368 0.30 +0.4
1,031,873 - SM_b21368 0.30 -0.6
1,031,877 + SM_b21368 0.30 +0.7
1,031,877 + SM_b21368 0.30 -0.2
1,031,878 - SM_b21368 0.30 +0.9
1,031,878 - SM_b21368 0.30 +0.4
1,031,963 - SM_b21368 0.39 +0.7
1,031,963 - SM_b21368 0.39 -0.3
1,031,963 - SM_b21368 0.39 -2.1
1,032,057 + SM_b21368 0.48 +0.5
1,032,057 + SM_b21368 0.48 -0.5
1,032,058 - SM_b21368 0.48 -1.4
1,032,175 + SM_b21368 0.60 -0.5
1,032,208 + SM_b21368 0.64 +0.1
1,032,366 + SM_b21368 0.80 +1.8
1,032,567 + -0.1
1,032,567 + -0.4
1,032,567 + -0.4
1,032,567 + -0.3
1,032,568 - -0.1
1,032,568 - -0.6
1,032,568 - +0.7

Or see this region's nucleotide sequence