Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21300 and SM_b21301 are separated by 4 nucleotides SM_b21301 and SM_b21302 are separated by 124 nucleotides SM_b21302 and SM_b21303 are separated by 20 nucleotides
SM_b21300: SM_b21300 - deoxyribose-phosphate aldolase, at 881,501 to 882,505
_b21300
SM_b21301: SM_b21301 - ly membrane-anchored aldehyde dehydrogenase, at 882,510 to 884,894
_b21301
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
Position (kb) 882
883
884
885 Strain fitness (log2 ratio) -2
-1
0
1 at 881.554 kb on + strand at 881.555 kb on - strand at 881.577 kb on + strand at 881.859 kb on - strand, within SM_b21300 at 882.275 kb on + strand, within SM_b21300 at 882.276 kb on - strand, within SM_b21300 at 882.305 kb on + strand, within SM_b21300 at 882.350 kb on + strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.351 kb on - strand, within SM_b21300 at 882.473 kb on + strand at 882.474 kb on - strand at 882.543 kb on + strand at 882.620 kb on - strand at 882.620 kb on - strand at 882.804 kb on + strand, within SM_b21301 at 882.905 kb on - strand, within SM_b21301 at 882.928 kb on - strand, within SM_b21301 at 882.928 kb on - strand, within SM_b21301 at 883.097 kb on + strand, within SM_b21301 at 883.217 kb on + strand, within SM_b21301 at 883.736 kb on + strand, within SM_b21301 at 883.951 kb on - strand, within SM_b21301 at 883.956 kb on + strand, within SM_b21301 at 883.957 kb on - strand, within SM_b21301 at 884.257 kb on - strand, within SM_b21301 at 884.257 kb on - strand, within SM_b21301 at 884.259 kb on + strand, within SM_b21301 at 884.259 kb on + strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.260 kb on - strand, within SM_b21301 at 884.382 kb on + strand, within SM_b21301 at 884.403 kb on + strand, within SM_b21301 at 884.601 kb on + strand, within SM_b21301 at 884.602 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.646 kb on - strand, within SM_b21301 at 884.777 kb on + strand at 884.778 kb on - strand at 884.892 kb on + strand at 885.031 kb on - strand at 885.347 kb on - strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.425 kb on - strand, within SM_b21302 at 885.487 kb on + strand at 885.541 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.728 kb on + strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 881,554 + +0.2 881,555 - +1.0 881,577 + +0.0 881,859 - SM_b21300 0.36 +1.2 882,275 + SM_b21300 0.77 +0.4 882,276 - SM_b21300 0.77 +0.1 882,305 + SM_b21300 0.80 -0.5 882,350 + SM_b21300 0.84 -0.5 882,351 - SM_b21300 0.85 +1.0 882,351 - SM_b21300 0.85 -1.0 882,351 - SM_b21300 0.85 -0.4 882,473 + +0.0 882,474 - -0.2 882,543 + +1.6 882,620 - +0.5 882,620 - +0.4 882,804 + SM_b21301 0.12 +0.6 882,905 - SM_b21301 0.17 -0.2 882,928 - SM_b21301 0.18 -0.0 882,928 - SM_b21301 0.18 +0.7 883,097 + SM_b21301 0.25 -0.1 883,217 + SM_b21301 0.30 +0.6 883,736 + SM_b21301 0.51 -0.3 883,951 - SM_b21301 0.60 -0.0 883,956 + SM_b21301 0.61 +0.3 883,957 - SM_b21301 0.61 -0.9 884,257 - SM_b21301 0.73 -1.0 884,257 - SM_b21301 0.73 -0.8 884,259 + SM_b21301 0.73 +0.7 884,259 + SM_b21301 0.73 -0.1 884,260 - SM_b21301 0.73 -0.7 884,260 - SM_b21301 0.73 -2.2 884,260 - SM_b21301 0.73 +0.4 884,382 + SM_b21301 0.78 -0.5 884,403 + SM_b21301 0.79 +0.9 884,601 + SM_b21301 0.88 -1.7 884,602 - SM_b21301 0.88 +1.5 884,646 - SM_b21301 0.90 +0.6 884,646 - SM_b21301 0.90 +0.1 884,777 + +0.2 884,778 - -0.9 884,892 + -0.0 885,031 - -1.0 885,347 - SM_b21302 0.72 -0.7 885,370 + SM_b21302 0.77 -0.8 885,370 + SM_b21302 0.77 +0.2 885,425 - SM_b21302 0.89 +0.8 885,487 + -0.5 885,541 + SM_b21303 0.11 -0.2 885,645 + SM_b21303 0.35 +0.8 885,645 + SM_b21303 0.35 -0.3 885,645 + SM_b21303 0.35 +0.6 885,646 - SM_b21303 0.35 -0.4 885,646 - SM_b21303 0.35 +0.3 885,646 - SM_b21303 0.35 -0.0 885,728 + SM_b21303 0.54 -0.5 885,729 - SM_b21303 0.55 +0.1 885,729 - SM_b21303 0.55 +0.6
Or see this region's nucleotide sequence