Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21280 and SM_b21281 are separated by 199 nucleotides SM_b21281 and SM_b22012 are separated by 272 nucleotides SM_b22012 and SM_b21283 are separated by 93 nucleotides
SM_b21280: SM_b21280 - phosphoribosyltransferase, at 854,815 to 855,525
_b21280
SM_b21281: SM_b21281 - xanthine uracil permease, at 855,725 to 857,098
_b21281
SM_b22012: SM_b22012 - hypothetical protein, at 857,371 to 857,778
_b22012
SM_b21283: SM_b21283 - allantoicase, at 857,872 to 858,894
_b21283
Position (kb) 855
856
857
858 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 854.814 kb on + strand at 854.815 kb on - strand at 854.848 kb on + strand at 855.146 kb on - strand, within SM_b21280 at 855.210 kb on + strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.242 kb on - strand, within SM_b21280 at 855.452 kb on + strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.523 kb on + strand at 855.523 kb on + strand at 855.524 kb on - strand at 855.524 kb on - strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.687 kb on + strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.688 kb on - strand at 855.829 kb on + strand at 855.830 kb on - strand at 855.886 kb on + strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.887 kb on - strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.896 kb on + strand, within SM_b21281 at 855.897 kb on - strand, within SM_b21281 at 856.709 kb on + strand, within SM_b21281 at 856.709 kb on + strand, within SM_b21281 at 856.710 kb on - strand, within SM_b21281 at 856.829 kb on + strand, within SM_b21281 at 856.853 kb on + strand at 856.853 kb on + strand, within SM_b21281 at 856.853 kb on + strand, within SM_b21281 at 856.854 kb on - strand, within SM_b21281 at 856.989 kb on + strand at 856.989 kb on + strand at 856.994 kb on + strand at 856.995 kb on - strand at 856.995 kb on - strand at 856.995 kb on - strand at 857.201 kb on + strand at 857.201 kb on + strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.268 kb on - strand at 857.596 kb on + strand, within SM_b22012 at 857.658 kb on - strand, within SM_b22012 at 857.674 kb on + strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.825 kb on - strand at 857.825 kb on - strand at 857.829 kb on + strand at 857.993 kb on + strand, within SM_b21283 at 857.994 kb on - strand, within SM_b21283
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 854,814 + +2.1 854,815 - -0.1 854,848 + +0.1 855,146 - SM_b21280 0.47 +0.1 855,210 + SM_b21280 0.56 -0.5 855,211 - SM_b21280 0.56 +0.9 855,211 - SM_b21280 0.56 +1.2 855,242 - SM_b21280 0.60 +0.9 855,452 + SM_b21280 0.90 -0.3 855,453 - SM_b21280 0.90 -0.5 855,453 - SM_b21280 0.90 +1.9 855,523 + -0.2 855,523 + +0.5 855,524 - -0.2 855,524 - -0.3 855,687 + +0.4 855,687 + -0.7 855,687 + +0.2 855,687 + +0.7 855,688 - +0.3 855,688 - -0.1 855,688 - -0.1 855,688 - +0.1 855,688 - -0.1 855,829 + +2.9 855,830 - +0.2 855,886 + SM_b21281 0.12 -0.4 855,887 - SM_b21281 0.12 +0.4 855,887 - SM_b21281 0.12 +0.1 855,887 - SM_b21281 0.12 -0.8 855,896 + SM_b21281 0.12 -1.2 855,896 + SM_b21281 0.12 -0.2 855,896 + SM_b21281 0.12 -1.0 855,896 + SM_b21281 0.12 -1.2 855,897 - SM_b21281 0.13 +0.1 856,709 + SM_b21281 0.72 +0.5 856,709 + SM_b21281 0.72 -1.1 856,710 - SM_b21281 0.72 -0.3 856,829 + SM_b21281 0.80 -2.1 856,853 + +3.2 856,853 + SM_b21281 0.82 -1.2 856,853 + SM_b21281 0.82 -0.2 856,854 - SM_b21281 0.82 -0.5 856,989 + -1.1 856,989 + -0.3 856,994 + -0.2 856,995 - -0.5 856,995 - -0.4 856,995 - -0.1 857,201 + +2.2 857,201 + -0.3 857,202 - -0.6 857,202 - -0.6 857,202 - -0.3 857,202 - +0.0 857,268 - -1.0 857,596 + SM_b22012 0.55 +0.1 857,658 - SM_b22012 0.70 -0.3 857,674 + SM_b22012 0.74 -1.0 857,675 - SM_b22012 0.75 +0.1 857,675 - SM_b22012 0.75 +0.1 857,675 - SM_b22012 0.75 +1.8 857,676 + SM_b22012 0.75 -0.2 857,676 + SM_b22012 0.75 -0.2 857,676 + SM_b22012 0.75 -1.3 857,676 + SM_b22012 0.75 -0.1 857,677 - SM_b22012 0.75 -0.0 857,677 - SM_b22012 0.75 -0.6 857,677 - SM_b22012 0.75 -1.0 857,677 - SM_b22012 0.75 +0.0 857,733 + SM_b22012 0.89 -1.8 857,733 + SM_b22012 0.89 +0.2 857,733 + SM_b22012 0.89 -0.8 857,825 - -0.8 857,825 - -0.5 857,829 + +0.4 857,993 + SM_b21283 0.12 +0.0 857,994 - SM_b21283 0.12 -0.9
Or see this region's nucleotide sequence