Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21233 and SM_b21234 overlap by 4 nucleotides SM_b21234 and SM_b21235 are separated by 480 nucleotides SM_b21235 and SM_b21236 are separated by 444 nucleotides
SM_b21233: SM_b21233 - transposase of insertion sequence ISRm1 orfB protein, at 799,170 to 800,000
_b21233
SM_b21234: SM_b21234 - transposase of insertion sequence ISRm1 orfA protein, at 799,997 to 800,389
_b21234
SM_b21235: SM_b21235 - formyltransferase, methionyl-tRNA(fMet) N-formyltransferase, at 800,870 to 801,808
_b21235
SM_b21236: SM_b21236 - ATPGTP-binding protein, at 802,253 to 803,104
_b21236
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.415 kb on + strand at 800.415 kb on + strand at 800.415 kb on + strand at 800.419 kb on + strand at 800.419 kb on + strand at 800.551 kb on + strand at 800.576 kb on + strand at 800.603 kb on + strand at 800.616 kb on + strand at 800.658 kb on + strand at 800.659 kb on - strand at 800.719 kb on - strand at 801.014 kb on - strand, within SM_b21235 at 801.014 kb on - strand, within SM_b21235 at 801.043 kb on + strand, within SM_b21235 at 801.043 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.045 kb on + strand, within SM_b21235 at 801.046 kb on - strand, within SM_b21235 at 801.046 kb on - strand, within SM_b21235 at 801.087 kb on - strand, within SM_b21235 at 801.101 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.102 kb on + strand, within SM_b21235 at 801.109 kb on + strand, within SM_b21235 at 801.216 kb on + strand, within SM_b21235 at 801.288 kb on - strand, within SM_b21235 at 801.288 kb on - strand, within SM_b21235 at 801.319 kb on + strand, within SM_b21235 at 801.322 kb on - strand, within SM_b21235 at 801.368 kb on + strand, within SM_b21235 at 801.369 kb on - strand, within SM_b21235 at 801.446 kb on - strand, within SM_b21235 at 801.560 kb on + strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.561 kb on - strand, within SM_b21235 at 801.620 kb on + strand, within SM_b21235 at 801.720 kb on - strand at 801.722 kb on + strand at 801.723 kb on - strand at 801.723 kb on - strand at 801.798 kb on - strand at 801.819 kb on + strand at 801.864 kb on - strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.865 kb on + strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.866 kb on - strand at 801.871 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.901 kb on + strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.902 kb on - strand at 801.977 kb on + strand at 801.977 kb on + strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 801.978 kb on - strand at 802.008 kb on + strand at 802.008 kb on + strand at 802.066 kb on - strand at 802.070 kb on + strand at 802.070 kb on + strand at 802.071 kb on - strand at 802.138 kb on + strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.139 kb on - strand at 802.201 kb on + strand at 802.201 kb on + strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.202 kb on - strand at 802.260 kb on + strand at 802.261 kb on - strand at 802.277 kb on + strand at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.525 kb on + strand, within SM_b21236 at 802.526 kb on - strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.545 kb on + strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.546 kb on - strand, within SM_b21236 at 802.611 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.616 kb on + strand, within SM_b21236 at 802.617 kb on - strand, within SM_b21236 at 802.664 kb on + strand, within SM_b21236
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 800,415 + +0.6 800,415 + +0.4 800,415 + +0.5 800,419 + +1.1 800,419 + +0.4 800,551 + +0.7 800,576 + +0.2 800,603 + -0.7 800,616 + -0.5 800,658 + +0.1 800,659 - -0.3 800,719 - +0.1 801,014 - SM_b21235 0.15 +0.1 801,014 - SM_b21235 0.15 +0.8 801,043 + SM_b21235 0.18 -0.1 801,043 + SM_b21235 0.18 -0.9 801,045 + SM_b21235 0.19 +1.2 801,045 + SM_b21235 0.19 +0.4 801,045 + SM_b21235 0.19 -1.2 801,045 + SM_b21235 0.19 +0.1 801,045 + SM_b21235 0.19 -0.0 801,045 + SM_b21235 0.19 -0.0 801,046 - SM_b21235 0.19 +1.0 801,046 - SM_b21235 0.19 +0.6 801,087 - SM_b21235 0.23 -0.6 801,101 + SM_b21235 0.25 +0.4 801,102 + SM_b21235 0.25 +0.6 801,102 + SM_b21235 0.25 -0.7 801,102 + SM_b21235 0.25 -0.8 801,109 + SM_b21235 0.25 -0.1 801,216 + SM_b21235 0.37 -0.1 801,288 - SM_b21235 0.45 -0.1 801,288 - SM_b21235 0.45 -0.2 801,319 + SM_b21235 0.48 +1.5 801,322 - SM_b21235 0.48 +1.1 801,368 + SM_b21235 0.53 -0.3 801,369 - SM_b21235 0.53 +0.6 801,446 - SM_b21235 0.61 +2.5 801,560 + SM_b21235 0.73 -0.5 801,561 - SM_b21235 0.74 +2.3 801,561 - SM_b21235 0.74 +1.8 801,620 + SM_b21235 0.80 +0.5 801,720 - -0.0 801,722 + -0.2 801,723 - -1.0 801,723 - +0.2 801,798 - -1.4 801,819 + -0.0 801,864 - +0.1 801,865 + +0.3 801,865 + +0.2 801,865 + +1.6 801,866 - -0.2 801,866 - +1.0 801,866 - +0.1 801,866 - +0.5 801,866 - +1.0 801,866 - -0.7 801,871 + -0.0 801,901 + +0.6 801,901 + -2.6 801,901 + +0.0 801,902 - -0.3 801,902 - +0.6 801,902 - -0.5 801,902 - +0.0 801,902 - -0.2 801,902 - -1.7 801,977 + +0.4 801,977 + -0.2 801,978 - +1.9 801,978 - +0.3 801,978 - -1.4 801,978 - +0.7 801,978 - -0.1 802,008 + +0.4 802,008 + +0.3 802,066 - -1.1 802,070 + -0.1 802,070 + -0.0 802,071 - +0.2 802,138 + +1.0 802,139 - -1.1 802,139 - +0.4 802,139 - +0.4 802,201 + +0.0 802,201 + -0.4 802,202 - -0.1 802,202 - +1.3 802,202 - +0.3 802,260 + -0.2 802,261 - +0.1 802,277 + +0.5 802,525 + SM_b21236 0.32 -1.2 802,525 + SM_b21236 0.32 -0.2 802,525 + SM_b21236 0.32 -0.6 802,526 - SM_b21236 0.32 -0.6 802,545 + SM_b21236 0.34 +0.8 802,545 + SM_b21236 0.34 +0.5 802,545 + SM_b21236 0.34 +0.0 802,545 + SM_b21236 0.34 +0.1 802,545 + SM_b21236 0.34 -2.0 802,546 - SM_b21236 0.34 +0.0 802,546 - SM_b21236 0.34 +0.0 802,546 - SM_b21236 0.34 +1.0 802,611 + SM_b21236 0.42 -0.4 802,616 + SM_b21236 0.43 -0.4 802,616 + SM_b21236 0.43 -0.6 802,617 - SM_b21236 0.43 -0.3 802,664 + SM_b21236 0.48 -1.3
Or see this region's nucleotide sequence