Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21163

Experiment: Paraquat dichloride 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21162 and SM_b21163 are separated by 197 nucleotidesSM_b21163 and SM_b21164 are separated by 2 nucleotidesSM_b21164 and SM_b21165 are separated by 1 nucleotides SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971 _b21162 SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) (from data), at 908,169 to 909,842 _b21163 SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) (from data), at 909,845 to 910,660 _b21164 SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 910,662 to 912,197 _b21165 Position (kb) 908 909 910Strain fitness (log2 ratio) -2 -1 0 1 2at 907.403 kb on + strand, within SM_b21162at 907.404 kb on - strand, within SM_b21162at 907.404 kb on - strand, within SM_b21162at 907.406 kb on + strand, within SM_b21162at 907.406 kb on + strand, within SM_b21162at 907.543 kb on - strand, within SM_b21162at 907.608 kb on + strand, within SM_b21162at 907.609 kb on - strand, within SM_b21162at 907.609 kb on - strand, within SM_b21162at 907.638 kb on - strand, within SM_b21162at 907.639 kb on + strand, within SM_b21162at 907.639 kb on + strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.691 kb on - strand, within SM_b21162at 907.750 kb on + strand, within SM_b21162at 907.751 kb on - strand, within SM_b21162at 907.751 kb on - strand, within SM_b21162at 907.889 kb on + strandat 907.890 kb on - strandat 908.164 kb on + strandat 908.164 kb on + strandat 908.165 kb on - strandat 908.165 kb on - strandat 908.221 kb on - strandat 908.316 kb on - strandat 908.396 kb on + strand, within SM_b21163at 908.396 kb on + strand, within SM_b21163at 908.396 kb on + strand, within SM_b21163at 908.726 kb on - strand, within SM_b21163at 908.798 kb on + strand, within SM_b21163at 908.801 kb on - strand, within SM_b21163at 908.801 kb on - strand, within SM_b21163at 908.878 kb on + strand, within SM_b21163at 909.025 kb on + strand, within SM_b21163at 909.026 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.106 kb on - strand, within SM_b21163at 909.397 kb on + strand, within SM_b21163at 909.398 kb on - strand, within SM_b21163at 909.430 kb on + strand, within SM_b21163at 909.430 kb on + strand, within SM_b21163at 909.431 kb on - strand, within SM_b21163at 909.431 kb on - strand, within SM_b21163at 909.460 kb on + strand, within SM_b21163at 909.691 kb on + strandat 909.821 kb on + strandat 909.822 kb on - strandat 910.154 kb on - strand, within SM_b21164at 910.325 kb on + strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.326 kb on - strand, within SM_b21164at 910.364 kb on - strand, within SM_b21164at 910.454 kb on + strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.455 kb on - strand, within SM_b21164at 910.513 kb on - strand, within SM_b21164at 910.759 kb on + strandat 910.759 kb on + strandat 910.759 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
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907,403 + SM_b21162 0.53 -0.7
907,404 - SM_b21162 0.53 -0.7
907,404 - SM_b21162 0.53 +1.0
907,406 + SM_b21162 0.53 -0.4
907,406 + SM_b21162 0.53 -1.5
907,543 - SM_b21162 0.65 -1.0
907,608 + SM_b21162 0.70 -1.0
907,609 - SM_b21162 0.70 +0.4
907,609 - SM_b21162 0.70 -0.4
907,638 - SM_b21162 0.73 -0.4
907,639 + SM_b21162 0.73 +0.1
907,639 + SM_b21162 0.73 +0.7
907,640 - SM_b21162 0.73 +0.7
907,640 - SM_b21162 0.73 -0.7
907,640 - SM_b21162 0.73 -0.1
907,640 - SM_b21162 0.73 -0.1
907,691 - SM_b21162 0.77 -0.4
907,750 + SM_b21162 0.82 -0.3
907,751 - SM_b21162 0.82 -0.9
907,751 - SM_b21162 0.82 +0.8
907,889 + -0.1
907,890 - -1.6
908,164 + +0.4
908,164 + -0.4
908,165 - -1.5
908,165 - -0.2
908,221 - -0.6
908,316 - -0.3
908,396 + SM_b21163 0.14 +1.2
908,396 + SM_b21163 0.14 +0.1
908,396 + SM_b21163 0.14 +1.0
908,726 - SM_b21163 0.33 +0.9
908,798 + SM_b21163 0.38 -0.9
908,801 - SM_b21163 0.38 -0.4
908,801 - SM_b21163 0.38 +0.1
908,878 + SM_b21163 0.42 +0.7
909,025 + SM_b21163 0.51 -0.3
909,026 - SM_b21163 0.51 +2.2
909,106 - SM_b21163 0.56 -0.6
909,106 - SM_b21163 0.56 -1.8
909,106 - SM_b21163 0.56 +0.2
909,106 - SM_b21163 0.56 +0.0
909,106 - SM_b21163 0.56 -1.0
909,397 + SM_b21163 0.73 -0.7
909,398 - SM_b21163 0.73 -1.0
909,430 + SM_b21163 0.75 +0.8
909,430 + SM_b21163 0.75 -0.4
909,431 - SM_b21163 0.75 +0.3
909,431 - SM_b21163 0.75 -1.1
909,460 + SM_b21163 0.77 +0.8
909,691 + +0.4
909,821 + +0.5
909,822 - -0.1
910,154 - SM_b21164 0.38 -1.4
910,325 + SM_b21164 0.59 -0.1
910,326 - SM_b21164 0.59 -0.7
910,326 - SM_b21164 0.59 +0.8
910,364 - SM_b21164 0.64 -0.3
910,454 + SM_b21164 0.75 +1.9
910,455 - SM_b21164 0.75 -1.4
910,455 - SM_b21164 0.75 -0.1
910,455 - SM_b21164 0.75 +0.4
910,455 - SM_b21164 0.75 +0.5
910,513 - SM_b21164 0.82 +0.6
910,759 + -0.9
910,759 + +0.2
910,759 + -0.8

Or see this region's nucleotide sequence