Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20702 and SM_b20703 are separated by 51 nucleotides SM_b20703 and SM_b20704 are separated by 276 nucleotides
SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623
_b20702
SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184
_b20703
SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921
_b20704
Position (kb)
1504
1505
1506 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1503.874 kb on + strand, within SM_b20702 at 1503.875 kb on - strand, within SM_b20702 at 1503.877 kb on + strand, within SM_b20702 at 1503.877 kb on + strand, within SM_b20702 at 1503.877 kb on + strand, within SM_b20702 at 1503.878 kb on - strand at 1503.985 kb on + strand, within SM_b20702 at 1504.007 kb on - strand, within SM_b20702 at 1504.055 kb on + strand, within SM_b20702 at 1504.282 kb on - strand at 1504.443 kb on - strand, within SM_b20702 at 1504.443 kb on - strand, within SM_b20702 at 1504.645 kb on + strand at 1504.676 kb on + strand at 1504.676 kb on + strand at 1504.677 kb on - strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.685 kb on + strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1504.686 kb on - strand at 1505.043 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.078 kb on + strand, within SM_b20703 at 1505.079 kb on - strand, within SM_b20703 at 1505.155 kb on + strand at 1505.156 kb on - strand at 1505.156 kb on - strand at 1505.214 kb on - strand at 1505.265 kb on + strand at 1505.352 kb on - strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.468 kb on + strand at 1505.525 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.590 kb on + strand at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.725 kb on + strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.726 kb on - strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.746 kb on + strand, within SM_b20704 at 1505.747 kb on - strand, within SM_b20704 at 1505.770 kb on + strand, within SM_b20704 at 1505.899 kb on + strand, within SM_b20704 at 1505.900 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.909 kb on - strand, within SM_b20704 at 1505.983 kb on + strand, within SM_b20704 at 1505.984 kb on - strand, within SM_b20704 at 1506.016 kb on + strand, within SM_b20704 at 1506.109 kb on + strand, within SM_b20704 at 1506.110 kb on - strand, within SM_b20704
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,503,874 + SM_b20702 0.55 -0.3 1,503,875 - SM_b20702 0.55 +0.1 1,503,877 + SM_b20702 0.55 -0.2 1,503,877 + SM_b20702 0.55 +0.6 1,503,877 + SM_b20702 0.55 -0.1 1,503,878 - +2.8 1,503,985 + SM_b20702 0.62 -0.0 1,504,007 - SM_b20702 0.63 -1.4 1,504,055 + SM_b20702 0.66 -1.6 1,504,282 - +1.0 1,504,443 - SM_b20702 0.89 -0.5 1,504,443 - SM_b20702 0.89 +0.8 1,504,645 + +0.0 1,504,676 + -0.3 1,504,676 + +1.3 1,504,677 - +0.3 1,504,685 + +0.3 1,504,685 + -0.6 1,504,685 + -0.8 1,504,686 - +0.4 1,504,686 - -0.5 1,504,686 - +0.5 1,504,686 - +0.2 1,504,686 - +1.9 1,505,043 + SM_b20703 0.72 +0.2 1,505,078 + SM_b20703 0.79 -0.7 1,505,078 + SM_b20703 0.79 -0.1 1,505,078 + SM_b20703 0.79 -2.1 1,505,079 - SM_b20703 0.79 +0.0 1,505,155 + -0.5 1,505,156 - -0.3 1,505,156 - -0.0 1,505,214 - -0.2 1,505,265 + +0.2 1,505,352 - +0.7 1,505,468 + -0.7 1,505,468 + -0.0 1,505,468 + +0.6 1,505,525 + -0.6 1,505,590 + +1.4 1,505,590 + +2.4 1,505,590 + +1.9 1,505,725 + SM_b20704 0.18 +0.4 1,505,725 + SM_b20704 0.18 +0.9 1,505,725 + SM_b20704 0.18 -0.1 1,505,726 - SM_b20704 0.18 +1.5 1,505,726 - SM_b20704 0.18 -0.1 1,505,746 + SM_b20704 0.20 +1.2 1,505,746 + SM_b20704 0.20 -0.3 1,505,747 - SM_b20704 0.20 +0.2 1,505,770 + SM_b20704 0.21 +0.4 1,505,899 + SM_b20704 0.30 -0.3 1,505,900 - SM_b20704 0.30 +0.7 1,505,909 - SM_b20704 0.31 -0.9 1,505,909 - SM_b20704 0.31 -1.0 1,505,983 + SM_b20704 0.36 -0.2 1,505,984 - SM_b20704 0.36 +0.4 1,506,016 + SM_b20704 0.38 -1.3 1,506,109 + SM_b20704 0.44 +0.7 1,506,110 - SM_b20704 0.44 -0.0
Or see this region's nucleotide sequence