Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20692 and SM_b20694 are separated by 575 nucleotides SM_b20694 and SM_b20695 are separated by 80 nucleotides SM_b20695 and SM_b20696 overlap by 4 nucleotides SM_b20696 and SM_b20697 are separated by 101 nucleotides
SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932
_b20692
SM_b20694: SM_b20694 - hypothetical protein, at 1,495,508 to 1,495,684
_b20694
SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271
_b20695
SM_b20696: SM_b20696 - hypothetical protein, at 1,496,268 to 1,496,753
_b20696
SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549
_b20697
Position (kb)
1495
1496
1497 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1494.782 kb on + strand, within SM_b20692 at 1495.013 kb on - strand at 1495.238 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.351 kb on + strand at 1495.471 kb on - strand at 1495.471 kb on - strand at 1495.566 kb on + strand at 1495.682 kb on + strand at 1495.738 kb on + strand at 1495.827 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1495.870 kb on - strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.006 kb on + strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.007 kb on - strand, within SM_b20695 at 1496.046 kb on + strand, within SM_b20695 at 1496.047 kb on - strand, within SM_b20695 at 1496.079 kb on + strand, within SM_b20695 at 1496.126 kb on + strand, within SM_b20695 at 1496.145 kb on + strand, within SM_b20695 at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.275 kb on + strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.276 kb on - strand at 1496.364 kb on + strand, within SM_b20696 at 1496.420 kb on + strand, within SM_b20696 at 1496.433 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.531 kb on + strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.532 kb on - strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.535 kb on + strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.536 kb on - strand, within SM_b20696 at 1496.686 kb on - strand, within SM_b20696 at 1496.766 kb on - strand at 1496.766 kb on - strand at 1496.786 kb on + strand at 1496.787 kb on - strand at 1496.844 kb on - strand at 1496.931 kb on + strand at 1496.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,494,782 + SM_b20692 0.81 +0.2 1,495,013 - -0.4 1,495,238 + +2.1 1,495,351 + -0.5 1,495,351 + +1.0 1,495,351 + -0.1 1,495,351 + +0.4 1,495,471 - +0.1 1,495,471 - +0.0 1,495,566 + +0.2 1,495,682 + +0.9 1,495,738 + +0.5 1,495,827 - SM_b20695 0.12 +0.6 1,495,870 - SM_b20695 0.21 +0.0 1,495,870 - SM_b20695 0.21 +0.3 1,495,870 - SM_b20695 0.21 +0.9 1,496,006 + SM_b20695 0.48 -0.9 1,496,006 + SM_b20695 0.48 +0.1 1,496,007 - SM_b20695 0.48 -0.5 1,496,007 - SM_b20695 0.48 -0.4 1,496,007 - SM_b20695 0.48 +2.1 1,496,046 + SM_b20695 0.55 +0.8 1,496,047 - SM_b20695 0.56 +1.8 1,496,079 + SM_b20695 0.62 -0.4 1,496,126 + SM_b20695 0.71 +0.4 1,496,145 + SM_b20695 0.75 +1.6 1,496,275 + -0.1 1,496,275 + -0.0 1,496,275 + +2.0 1,496,276 - +0.3 1,496,276 - -0.1 1,496,276 - +0.2 1,496,276 - +0.3 1,496,276 - +0.5 1,496,364 + SM_b20696 0.20 +1.5 1,496,420 + SM_b20696 0.31 +0.3 1,496,433 + SM_b20696 0.34 +0.2 1,496,531 + SM_b20696 0.54 +0.0 1,496,531 + SM_b20696 0.54 +0.4 1,496,532 - SM_b20696 0.54 -1.8 1,496,532 - SM_b20696 0.54 -0.2 1,496,535 + SM_b20696 0.55 +0.8 1,496,535 + SM_b20696 0.55 +0.1 1,496,535 + SM_b20696 0.55 -1.1 1,496,536 - SM_b20696 0.55 -0.9 1,496,536 - SM_b20696 0.55 -1.5 1,496,686 - SM_b20696 0.86 -0.7 1,496,766 - -1.2 1,496,766 - -0.9 1,496,786 + +1.0 1,496,787 - +0.1 1,496,844 - +0.5 1,496,931 + -0.2 1,496,932 - -1.2
Or see this region's nucleotide sequence