Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20679 and SM_b20680 are separated by 5 nucleotides SM_b20680 and SM_b20681 are separated by 54 nucleotides SM_b20681 and SM_b20682 are separated by 169 nucleotides
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413
_b20680
SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252
_b20681
SM_b20682: SM_b20682 - IclR family transcriptional regulator, at 1,484,422 to 1,485,243
_b20682
Position (kb)
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.693 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.805 kb on + strand, within SM_b20680 at 1481.836 kb on + strand, within SM_b20680 at 1481.837 kb on - strand, within SM_b20680 at 1481.875 kb on + strand, within SM_b20680 at 1481.885 kb on - strand, within SM_b20680 at 1481.900 kb on + strand, within SM_b20680 at 1482.076 kb on - strand, within SM_b20680 at 1482.136 kb on + strand, within SM_b20680 at 1482.137 kb on - strand, within SM_b20680 at 1482.727 kb on + strand, within SM_b20681 at 1482.829 kb on + strand at 1482.857 kb on - strand, within SM_b20681 at 1482.857 kb on - strand, within SM_b20681 at 1482.913 kb on + strand, within SM_b20681 at 1482.914 kb on - strand, within SM_b20681 at 1483.033 kb on + strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.126 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681 at 1483.703 kb on - strand, within SM_b20681 at 1483.721 kb on - strand, within SM_b20681 at 1483.990 kb on + strand, within SM_b20681 at 1484.034 kb on + strand, within SM_b20681 at 1484.035 kb on - strand, within SM_b20681 at 1484.072 kb on - strand, within SM_b20681 at 1484.116 kb on - strand at 1484.116 kb on - strand at 1484.775 kb on + strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.784 kb on - strand, within SM_b20682 at 1484.964 kb on + strand, within SM_b20682 at 1485.098 kb on - strand, within SM_b20682
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,481,583 + -1.3 1,481,583 + +0.1 1,481,583 + -0.7 1,481,599 + -1.5 1,481,599 + -0.5 1,481,599 + -0.4 1,481,599 + -1.2 1,481,600 - +0.1 1,481,600 - +0.8 1,481,600 - -0.8 1,481,693 - SM_b20680 0.12 -0.7 1,481,753 - SM_b20680 0.19 -0.3 1,481,753 - SM_b20680 0.19 -0.1 1,481,805 + SM_b20680 0.25 +0.0 1,481,836 + SM_b20680 0.29 +0.5 1,481,837 - SM_b20680 0.29 +1.0 1,481,875 + SM_b20680 0.34 -1.0 1,481,885 - SM_b20680 0.35 -0.8 1,481,900 + SM_b20680 0.37 +0.6 1,482,076 - SM_b20680 0.59 -0.3 1,482,136 + SM_b20680 0.66 -0.2 1,482,137 - SM_b20680 0.66 +1.5 1,482,727 + SM_b20681 0.15 -0.8 1,482,829 + +3.8 1,482,857 - SM_b20681 0.22 -0.3 1,482,857 - SM_b20681 0.22 +0.8 1,482,913 + SM_b20681 0.25 -0.5 1,482,914 - SM_b20681 0.25 -2.5 1,483,033 + SM_b20681 0.32 +0.9 1,483,088 - SM_b20681 0.35 +0.4 1,483,088 - SM_b20681 0.35 -0.0 1,483,126 + SM_b20681 0.37 +0.1 1,483,378 + SM_b20681 0.51 +0.2 1,483,378 + SM_b20681 0.51 +0.2 1,483,703 - SM_b20681 0.69 -0.8 1,483,721 - SM_b20681 0.70 +1.1 1,483,990 + SM_b20681 0.85 +0.9 1,484,034 + SM_b20681 0.88 -0.6 1,484,035 - SM_b20681 0.88 +1.3 1,484,072 - SM_b20681 0.90 -0.2 1,484,116 - -0.6 1,484,116 - -1.1 1,484,775 + SM_b20682 0.43 -1.0 1,484,784 - SM_b20682 0.44 +1.0 1,484,784 - SM_b20682 0.44 +0.3 1,484,964 + SM_b20682 0.66 +0.7 1,485,098 - SM_b20682 0.82 +1.3
Or see this region's nucleotide sequence