Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20592 and SM_b20593 are separated by 78 nucleotides SM_b20593 and SM_b20594 are separated by 8 nucleotides SM_b20594 and SM_b20595 are separated by 52 nucleotides SM_b20595 and SM_b20596 are separated by 14 nucleotides
SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772
_b20592
SM_b20593: SM_b20593 - hypothetical protein, at 1,606,851 to 1,607,375
_b20593
SM_b20594: SM_b20594 - amicyanin precursor protein, at 1,607,384 to 1,607,701
_b20594
SM_b20595: SM_b20595 - cell division protein FtsK, at 1,607,754 to 1,609,589
_b20595
SM_b20596: SM_b20596 - hypothetical protein, at 1,609,604 to 1,610,593
_b20596
Position (kb)
1607
1608
1609
1610 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1606.856 kb on + strand at 1606.960 kb on - strand, within SM_b20593 at 1606.960 kb on - strand, within SM_b20593 at 1607.183 kb on + strand, within SM_b20593 at 1607.184 kb on - strand, within SM_b20593 at 1607.184 kb on - strand, within SM_b20593 at 1607.208 kb on + strand, within SM_b20593 at 1607.208 kb on + strand, within SM_b20593 at 1607.413 kb on - strand at 1607.413 kb on - strand at 1607.648 kb on + strand, within SM_b20594 at 1607.648 kb on + strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.649 kb on - strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.650 kb on + strand, within SM_b20594 at 1607.651 kb on - strand, within SM_b20594 at 1607.660 kb on + strand, within SM_b20594 at 1607.661 kb on - strand, within SM_b20594 at 1607.803 kb on + strand at 1607.803 kb on + strand at 1607.804 kb on - strand at 1607.917 kb on + strand at 1607.917 kb on + strand at 1607.918 kb on - strand at 1607.968 kb on + strand, within SM_b20595 at 1608.450 kb on - strand, within SM_b20595 at 1608.451 kb on + strand, within SM_b20595 at 1608.784 kb on + strand, within SM_b20595 at 1608.785 kb on - strand, within SM_b20595 at 1609.300 kb on + strand, within SM_b20595 at 1609.365 kb on + strand, within SM_b20595 at 1609.365 kb on + strand, within SM_b20595 at 1610.395 kb on - strand, within SM_b20596
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,606,856 + +0.5 1,606,960 - SM_b20593 0.21 +0.2 1,606,960 - SM_b20593 0.21 +2.4 1,607,183 + SM_b20593 0.63 +0.4 1,607,184 - SM_b20593 0.63 -0.6 1,607,184 - SM_b20593 0.63 -0.8 1,607,208 + SM_b20593 0.68 -0.1 1,607,208 + SM_b20593 0.68 +0.5 1,607,413 - -0.2 1,607,413 - +0.1 1,607,648 + SM_b20594 0.83 -0.5 1,607,648 + SM_b20594 0.83 -0.6 1,607,649 - SM_b20594 0.83 -0.2 1,607,649 - SM_b20594 0.83 +0.2 1,607,649 - SM_b20594 0.83 +0.0 1,607,650 + SM_b20594 0.84 -0.4 1,607,650 + SM_b20594 0.84 -0.5 1,607,650 + SM_b20594 0.84 +0.0 1,607,651 - SM_b20594 0.84 +0.2 1,607,660 + SM_b20594 0.87 -1.0 1,607,661 - SM_b20594 0.87 -0.2 1,607,803 + +2.2 1,607,803 + -0.4 1,607,804 - -1.1 1,607,917 + -0.1 1,607,917 + +0.4 1,607,918 - -0.5 1,607,968 + SM_b20595 0.12 -1.4 1,608,450 - SM_b20595 0.38 -0.6 1,608,451 + SM_b20595 0.38 -1.9 1,608,784 + SM_b20595 0.56 -1.9 1,608,785 - SM_b20595 0.56 -0.3 1,609,300 + SM_b20595 0.84 -0.5 1,609,365 + SM_b20595 0.88 -0.3 1,609,365 + SM_b20595 0.88 -0.4 1,610,395 - SM_b20596 0.80 -0.1
Or see this region's nucleotide sequence