Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20589 and SM_b20590 are separated by 182 nucleotides SM_b20590 and SM_b20591 are separated by 61 nucleotides SM_b20591 and SM_b20592 are separated by 25 nucleotides SM_b20592 and SM_b20593 are separated by 78 nucleotides
SM_b20589: SM_b20589 - beta-ketoadipyl CoA thiolase, at 1,603,997 to 1,605,199
_b20589
SM_b20590: SM_b20590 - acylphosphatase, at 1,605,382 to 1,605,705
_b20590
SM_b20591: SM_b20591 - hypothetical protein, at 1,605,767 to 1,606,063
_b20591
SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772
_b20592
SM_b20593: SM_b20593 - hypothetical protein, at 1,606,851 to 1,607,375
_b20593
Position (kb)
1605
1606
1607 Strain fitness (log2 ratio)
-1
0
1
2 at 1605.244 kb on + strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.245 kb on - strand at 1605.393 kb on + strand at 1605.765 kb on + strand at 1605.765 kb on + strand at 1605.819 kb on - strand, within SM_b20591 at 1605.819 kb on - strand at 1605.821 kb on + strand, within SM_b20591 at 1605.821 kb on + strand, within SM_b20591 at 1605.822 kb on - strand, within SM_b20591 at 1605.823 kb on + strand, within SM_b20591 at 1605.823 kb on + strand at 1605.824 kb on - strand, within SM_b20591 at 1605.824 kb on - strand, within SM_b20591 at 1605.991 kb on + strand, within SM_b20591 at 1605.991 kb on + strand, within SM_b20591 at 1605.992 kb on - strand, within SM_b20591 at 1606.010 kb on - strand, within SM_b20591 at 1606.035 kb on - strand at 1606.035 kb on - strand at 1606.056 kb on + strand at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.251 kb on + strand, within SM_b20592 at 1606.252 kb on - strand, within SM_b20592 at 1606.252 kb on - strand at 1606.252 kb on - strand, within SM_b20592 at 1606.252 kb on - strand, within SM_b20592 at 1606.252 kb on - strand, within SM_b20592 at 1606.252 kb on - strand, within SM_b20592 at 1606.252 kb on - strand, within SM_b20592 at 1606.383 kb on + strand, within SM_b20592 at 1606.383 kb on + strand, within SM_b20592 at 1606.384 kb on - strand, within SM_b20592 at 1606.384 kb on - strand, within SM_b20592 at 1606.384 kb on - strand, within SM_b20592 at 1606.518 kb on + strand, within SM_b20592 at 1606.518 kb on + strand, within SM_b20592 at 1606.518 kb on + strand, within SM_b20592 at 1606.519 kb on - strand, within SM_b20592 at 1606.519 kb on - strand, within SM_b20592 at 1606.519 kb on - strand, within SM_b20592 at 1606.529 kb on - strand, within SM_b20592 at 1606.856 kb on + strand at 1606.960 kb on - strand, within SM_b20593 at 1606.960 kb on - strand, within SM_b20593
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 1,605,244 + -0.5 1,605,245 - -0.1 1,605,245 - -1.2 1,605,245 - -0.4 1,605,245 - -1.0 1,605,393 + +0.9 1,605,765 + +0.0 1,605,765 + -1.2 1,605,819 - SM_b20591 0.18 -0.3 1,605,819 - +1.0 1,605,821 + SM_b20591 0.18 +0.1 1,605,821 + SM_b20591 0.18 -0.9 1,605,822 - SM_b20591 0.19 -0.8 1,605,823 + SM_b20591 0.19 -0.2 1,605,823 + +2.4 1,605,824 - SM_b20591 0.19 -1.4 1,605,824 - SM_b20591 0.19 -0.4 1,605,991 + SM_b20591 0.75 -0.1 1,605,991 + SM_b20591 0.75 +0.1 1,605,992 - SM_b20591 0.76 -0.0 1,606,010 - SM_b20591 0.82 -0.8 1,606,035 - +1.0 1,606,035 - -0.6 1,606,056 + +0.8 1,606,251 + SM_b20592 0.24 +0.5 1,606,251 + SM_b20592 0.24 +1.2 1,606,251 + SM_b20592 0.24 +0.6 1,606,251 + SM_b20592 0.24 -0.3 1,606,251 + SM_b20592 0.24 -1.2 1,606,251 + SM_b20592 0.24 +1.4 1,606,251 + SM_b20592 0.24 -0.9 1,606,252 - SM_b20592 0.24 -1.1 1,606,252 - +1.8 1,606,252 - SM_b20592 0.24 -0.4 1,606,252 - SM_b20592 0.24 -0.3 1,606,252 - SM_b20592 0.24 -0.6 1,606,252 - SM_b20592 0.24 -1.0 1,606,252 - SM_b20592 0.24 +0.2 1,606,383 + SM_b20592 0.43 -1.0 1,606,383 + SM_b20592 0.43 +0.1 1,606,384 - SM_b20592 0.43 -0.1 1,606,384 - SM_b20592 0.43 -1.7 1,606,384 - SM_b20592 0.43 -0.7 1,606,518 + SM_b20592 0.63 -0.2 1,606,518 + SM_b20592 0.63 -0.3 1,606,518 + SM_b20592 0.63 +0.7 1,606,519 - SM_b20592 0.63 +0.2 1,606,519 - SM_b20592 0.63 -0.1 1,606,519 - SM_b20592 0.63 -0.7 1,606,529 - SM_b20592 0.64 +1.0 1,606,856 + +0.5 1,606,960 - SM_b20593 0.21 +0.2 1,606,960 - SM_b20593 0.21 +2.4
Or see this region's nucleotide sequence