Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20591

Experiment: Paraquat dichloride 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20589 and SM_b20590 are separated by 182 nucleotidesSM_b20590 and SM_b20591 are separated by 61 nucleotidesSM_b20591 and SM_b20592 are separated by 25 nucleotidesSM_b20592 and SM_b20593 are separated by 78 nucleotides SM_b20589: SM_b20589 - beta-ketoadipyl CoA thiolase, at 1,603,997 to 1,605,199 _b20589 SM_b20590: SM_b20590 - acylphosphatase, at 1,605,382 to 1,605,705 _b20590 SM_b20591: SM_b20591 - hypothetical protein, at 1,605,767 to 1,606,063 _b20591 SM_b20592: SM_b20592 - RNA polymerase sigma factor, at 1,606,089 to 1,606,772 _b20592 SM_b20593: SM_b20593 - hypothetical protein, at 1,606,851 to 1,607,375 _b20593 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -1 0 1 2at 1605.244 kb on + strandat 1605.245 kb on - strandat 1605.245 kb on - strandat 1605.245 kb on - strandat 1605.245 kb on - strandat 1605.393 kb on + strandat 1605.765 kb on + strandat 1605.765 kb on + strandat 1605.819 kb on - strand, within SM_b20591at 1605.819 kb on - strandat 1605.821 kb on + strand, within SM_b20591at 1605.821 kb on + strand, within SM_b20591at 1605.822 kb on - strand, within SM_b20591at 1605.823 kb on + strand, within SM_b20591at 1605.823 kb on + strandat 1605.824 kb on - strand, within SM_b20591at 1605.824 kb on - strand, within SM_b20591at 1605.991 kb on + strand, within SM_b20591at 1605.991 kb on + strand, within SM_b20591at 1605.992 kb on - strand, within SM_b20591at 1606.010 kb on - strand, within SM_b20591at 1606.035 kb on - strandat 1606.035 kb on - strandat 1606.056 kb on + strandat 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.251 kb on + strand, within SM_b20592at 1606.252 kb on - strand, within SM_b20592at 1606.252 kb on - strandat 1606.252 kb on - strand, within SM_b20592at 1606.252 kb on - strand, within SM_b20592at 1606.252 kb on - strand, within SM_b20592at 1606.252 kb on - strand, within SM_b20592at 1606.252 kb on - strand, within SM_b20592at 1606.383 kb on + strand, within SM_b20592at 1606.383 kb on + strand, within SM_b20592at 1606.384 kb on - strand, within SM_b20592at 1606.384 kb on - strand, within SM_b20592at 1606.384 kb on - strand, within SM_b20592at 1606.518 kb on + strand, within SM_b20592at 1606.518 kb on + strand, within SM_b20592at 1606.518 kb on + strand, within SM_b20592at 1606.519 kb on - strand, within SM_b20592at 1606.519 kb on - strand, within SM_b20592at 1606.519 kb on - strand, within SM_b20592at 1606.529 kb on - strand, within SM_b20592at 1606.856 kb on + strandat 1606.960 kb on - strand, within SM_b20593at 1606.960 kb on - strand, within SM_b20593

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml
remove
1,605,244 + -0.5
1,605,245 - -0.1
1,605,245 - -1.2
1,605,245 - -0.4
1,605,245 - -1.0
1,605,393 + +0.9
1,605,765 + +0.0
1,605,765 + -1.2
1,605,819 - SM_b20591 0.18 -0.3
1,605,819 - +1.0
1,605,821 + SM_b20591 0.18 +0.1
1,605,821 + SM_b20591 0.18 -0.9
1,605,822 - SM_b20591 0.19 -0.8
1,605,823 + SM_b20591 0.19 -0.2
1,605,823 + +2.4
1,605,824 - SM_b20591 0.19 -1.4
1,605,824 - SM_b20591 0.19 -0.4
1,605,991 + SM_b20591 0.75 -0.1
1,605,991 + SM_b20591 0.75 +0.1
1,605,992 - SM_b20591 0.76 -0.0
1,606,010 - SM_b20591 0.82 -0.8
1,606,035 - +1.0
1,606,035 - -0.6
1,606,056 + +0.8
1,606,251 + SM_b20592 0.24 +0.5
1,606,251 + SM_b20592 0.24 +1.2
1,606,251 + SM_b20592 0.24 +0.6
1,606,251 + SM_b20592 0.24 -0.3
1,606,251 + SM_b20592 0.24 -1.2
1,606,251 + SM_b20592 0.24 +1.4
1,606,251 + SM_b20592 0.24 -0.9
1,606,252 - SM_b20592 0.24 -1.1
1,606,252 - +1.8
1,606,252 - SM_b20592 0.24 -0.4
1,606,252 - SM_b20592 0.24 -0.3
1,606,252 - SM_b20592 0.24 -0.6
1,606,252 - SM_b20592 0.24 -1.0
1,606,252 - SM_b20592 0.24 +0.2
1,606,383 + SM_b20592 0.43 -1.0
1,606,383 + SM_b20592 0.43 +0.1
1,606,384 - SM_b20592 0.43 -0.1
1,606,384 - SM_b20592 0.43 -1.7
1,606,384 - SM_b20592 0.43 -0.7
1,606,518 + SM_b20592 0.63 -0.2
1,606,518 + SM_b20592 0.63 -0.3
1,606,518 + SM_b20592 0.63 +0.7
1,606,519 - SM_b20592 0.63 +0.2
1,606,519 - SM_b20592 0.63 -0.1
1,606,519 - SM_b20592 0.63 -0.7
1,606,529 - SM_b20592 0.64 +1.0
1,606,856 + +0.5
1,606,960 - SM_b20593 0.21 +0.2
1,606,960 - SM_b20593 0.21 +2.4

Or see this region's nucleotide sequence