Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20533 and SM_b20534 are separated by 604 nucleotides SM_b20534 and SM_b20535 overlap by 4 nucleotides
SM_b20533: SM_b20533 - hypothetical protein, at 556,745 to 556,948
_b20533
SM_b20534: SM_b20534 - hypothetical protein, at 557,553 to 558,362
_b20534
SM_b20535: SM_b20535 - dehydrogenase, at 558,359 to 559,369
_b20535
Position (kb) 557
558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 556.582 kb on + strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.595 kb on - strand at 556.636 kb on + strand at 556.646 kb on - strand at 556.687 kb on - strand at 556.791 kb on - strand, within SM_b20533 at 556.918 kb on + strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.919 kb on - strand, within SM_b20533 at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.962 kb on - strand at 556.965 kb on + strand at 556.966 kb on - strand at 556.966 kb on - strand at 557.173 kb on + strand at 557.214 kb on + strand at 557.235 kb on + strand at 557.264 kb on + strand at 557.264 kb on + strand at 557.264 kb on + strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.265 kb on - strand at 557.392 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.434 kb on - strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.440 kb on + strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.441 kb on - strand at 557.490 kb on + strand at 557.490 kb on + strand at 557.491 kb on - strand at 557.491 kb on - strand at 557.529 kb on + strand at 557.529 kb on + strand at 557.561 kb on + strand at 557.731 kb on + strand, within SM_b20534 at 557.870 kb on - strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.875 kb on + strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.876 kb on - strand, within SM_b20534 at 557.902 kb on - strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.903 kb on + strand, within SM_b20534 at 557.904 kb on - strand, within SM_b20534 at 558.041 kb on - strand, within SM_b20534 at 558.160 kb on + strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.161 kb on - strand, within SM_b20534 at 558.169 kb on + strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.170 kb on - strand, within SM_b20534 at 558.487 kb on + strand, within SM_b20535 at 558.503 kb on + strand, within SM_b20535 at 558.519 kb on + strand, within SM_b20535 at 558.520 kb on - strand, within SM_b20535 at 558.665 kb on - strand, within SM_b20535 at 558.754 kb on + strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.755 kb on - strand, within SM_b20535 at 558.774 kb on - strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.816 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 558.966 kb on + strand, within SM_b20535 at 559.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 556,582 + -0.5 556,582 + -0.3 556,583 - +1.1 556,583 - -0.5 556,583 - +1.5 556,595 - +0.8 556,636 + -0.3 556,646 - -0.0 556,687 - -1.7 556,791 - SM_b20533 0.23 -0.1 556,918 + SM_b20533 0.85 -0.2 556,919 - SM_b20533 0.85 -0.4 556,919 - SM_b20533 0.85 +0.7 556,961 + +0.1 556,961 + +1.3 556,961 + -0.3 556,961 + +0.0 556,961 + -0.4 556,961 + +1.1 556,962 - +0.6 556,962 - +3.5 556,962 - +0.3 556,965 + -0.3 556,966 - +1.3 556,966 - +0.4 557,173 + -0.2 557,214 + -0.8 557,235 + -0.4 557,264 + +1.1 557,264 + +0.0 557,264 + -0.0 557,265 - +0.6 557,265 - -0.3 557,265 - -0.4 557,265 - +0.4 557,265 - +1.7 557,392 + +0.2 557,393 - -0.1 557,393 - -1.0 557,434 - -0.1 557,440 + -0.4 557,440 + -1.1 557,440 + -0.7 557,440 + -0.3 557,441 - +0.4 557,441 - +0.1 557,441 - +1.1 557,441 - -1.6 557,490 + -0.0 557,490 + -1.1 557,491 - -0.9 557,491 - +0.7 557,529 + -0.6 557,529 + +0.1 557,561 + -2.8 557,731 + SM_b20534 0.22 +0.9 557,870 - SM_b20534 0.39 +1.1 557,875 + SM_b20534 0.40 -0.4 557,875 + SM_b20534 0.40 -0.1 557,875 + SM_b20534 0.40 -0.2 557,876 - SM_b20534 0.40 +0.5 557,876 - SM_b20534 0.40 +2.0 557,876 - SM_b20534 0.40 +0.3 557,902 - SM_b20534 0.43 -0.3 557,903 + SM_b20534 0.43 +0.8 557,903 + SM_b20534 0.43 -0.4 557,904 - SM_b20534 0.43 +0.8 558,041 - SM_b20534 0.60 +0.1 558,160 + SM_b20534 0.75 -0.6 558,161 - SM_b20534 0.75 +1.9 558,161 - SM_b20534 0.75 -1.2 558,161 - SM_b20534 0.75 +1.1 558,161 - SM_b20534 0.75 -2.0 558,169 + SM_b20534 0.76 -1.0 558,170 - SM_b20534 0.76 +1.1 558,170 - SM_b20534 0.76 -0.2 558,487 + SM_b20535 0.13 +1.5 558,503 + SM_b20535 0.14 -0.1 558,519 + SM_b20535 0.16 -0.0 558,520 - SM_b20535 0.16 -0.6 558,665 - SM_b20535 0.30 -0.9 558,754 + SM_b20535 0.39 -0.0 558,755 - SM_b20535 0.39 +1.7 558,755 - SM_b20535 0.39 +0.4 558,774 - SM_b20535 0.41 +0.7 558,816 + SM_b20535 0.45 +0.3 558,816 + SM_b20535 0.45 +0.2 558,966 + SM_b20535 0.60 +1.3 558,966 + SM_b20535 0.60 -0.1 559,321 - -0.4
Or see this region's nucleotide sequence