Experiment: Paraquat dichloride 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20467 and SM_b20468 overlap by 4 nucleotides SM_b20468 and SM_b20469 are separated by 29 nucleotides SM_b20469 and SM_b20470 are separated by 668 nucleotides
SM_b20467: SM_b20467 - sensor kinase, at 479,716 to 481,539
_b20467
SM_b20468: SM_b20468 - sensory transduction DNA-binding response regulator protein, at 481,536 to 482,180
_b20468
SM_b20469: SM_b20469 - hypothetical protein, at 482,210 to 483,286
_b20469
SM_b20470: SM_b20470 - hypothetical protein, at 483,955 to 484,386
_b20470
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 481.211 kb on + strand, within SM_b20467 at 481.211 kb on + strand, within SM_b20467 at 481.212 kb on - strand, within SM_b20467 at 481.212 kb on - strand, within SM_b20467 at 481.212 kb on - strand, within SM_b20467 at 481.214 kb on - strand, within SM_b20467 at 481.214 kb on - strand, within SM_b20467 at 481.263 kb on + strand, within SM_b20467 at 481.263 kb on + strand, within SM_b20467 at 481.263 kb on + strand, within SM_b20467 at 481.263 kb on + strand, within SM_b20467 at 481.263 kb on + strand, within SM_b20467 at 481.264 kb on - strand, within SM_b20467 at 481.264 kb on - strand, within SM_b20467 at 481.269 kb on - strand, within SM_b20467 at 481.346 kb on + strand, within SM_b20467 at 481.346 kb on + strand, within SM_b20467 at 481.346 kb on + strand, within SM_b20467 at 481.484 kb on + strand at 481.573 kb on + strand at 481.702 kb on + strand, within SM_b20468 at 481.702 kb on + strand, within SM_b20468 at 481.703 kb on - strand, within SM_b20468 at 481.703 kb on - strand, within SM_b20468 at 481.703 kb on - strand, within SM_b20468 at 481.703 kb on - strand, within SM_b20468 at 481.733 kb on + strand, within SM_b20468 at 481.819 kb on + strand, within SM_b20468 at 481.908 kb on + strand, within SM_b20468 at 481.909 kb on - strand, within SM_b20468 at 481.928 kb on - strand, within SM_b20468 at 482.107 kb on - strand, within SM_b20468 at 482.107 kb on - strand, within SM_b20468 at 482.148 kb on - strand at 482.319 kb on + strand, within SM_b20469 at 482.319 kb on + strand, within SM_b20469 at 482.319 kb on + strand, within SM_b20469 at 482.320 kb on - strand, within SM_b20469 at 482.320 kb on - strand, within SM_b20469 at 482.320 kb on - strand, within SM_b20469 at 482.329 kb on + strand, within SM_b20469 at 482.330 kb on - strand, within SM_b20469 at 482.330 kb on - strand, within SM_b20469 at 482.330 kb on - strand, within SM_b20469 at 482.475 kb on + strand, within SM_b20469 at 482.475 kb on + strand, within SM_b20469 at 482.475 kb on + strand, within SM_b20469 at 482.476 kb on - strand, within SM_b20469 at 482.476 kb on - strand, within SM_b20469 at 482.485 kb on + strand, within SM_b20469 at 482.485 kb on + strand, within SM_b20469 at 482.485 kb on + strand, within SM_b20469 at 482.671 kb on + strand, within SM_b20469 at 482.671 kb on + strand, within SM_b20469 at 482.733 kb on + strand, within SM_b20469 at 482.733 kb on + strand, within SM_b20469 at 482.733 kb on + strand, within SM_b20469 at 482.733 kb on + strand, within SM_b20469 at 482.734 kb on - strand, within SM_b20469 at 482.776 kb on + strand, within SM_b20469 at 482.776 kb on + strand, within SM_b20469 at 482.777 kb on - strand, within SM_b20469 at 483.025 kb on - strand, within SM_b20469 at 483.026 kb on + strand, within SM_b20469 at 483.026 kb on + strand, within SM_b20469 at 483.026 kb on + strand, within SM_b20469 at 483.027 kb on - strand, within SM_b20469 at 483.027 kb on - strand, within SM_b20469 at 483.027 kb on - strand, within SM_b20469 at 483.027 kb on - strand, within SM_b20469 at 483.040 kb on + strand, within SM_b20469 at 483.064 kb on + strand, within SM_b20469 at 483.064 kb on + strand, within SM_b20469 at 483.065 kb on - strand, within SM_b20469 at 483.066 kb on + strand at 483.331 kb on + strand at 483.332 kb on - strand at 483.372 kb on - strand at 483.387 kb on - strand at 483.393 kb on - strand at 483.393 kb on - strand at 483.414 kb on + strand at 483.453 kb on + strand at 483.454 kb on - strand at 483.468 kb on + strand at 483.479 kb on + strand at 483.479 kb on + strand at 483.480 kb on - strand at 483.509 kb on + strand at 483.546 kb on + strand at 483.546 kb on + strand at 483.626 kb on + strand at 483.709 kb on + strand at 483.823 kb on - strand at 483.823 kb on - strand at 483.852 kb on + strand at 484.023 kb on + strand, within SM_b20470 at 484.024 kb on - strand, within SM_b20470 at 484.047 kb on + strand, within SM_b20470 at 484.083 kb on - strand, within SM_b20470 at 484.193 kb on + strand, within SM_b20470 at 484.193 kb on + strand, within SM_b20470 at 484.194 kb on - strand, within SM_b20470 at 484.194 kb on - strand, within SM_b20470 at 484.194 kb on - strand, within SM_b20470 at 484.198 kb on - strand, within SM_b20470 at 484.198 kb on - strand, within SM_b20470 at 484.198 kb on - strand, within SM_b20470 at 484.198 kb on - strand, within SM_b20470 at 484.198 kb on - strand, within SM_b20470 at 484.237 kb on + strand, within SM_b20470 at 484.238 kb on - strand, within SM_b20470 at 484.238 kb on - strand, within SM_b20470 at 484.257 kb on + strand, within SM_b20470
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.2 mg/ml remove 481,211 + SM_b20467 0.82 +1.0 481,211 + SM_b20467 0.82 -0.3 481,212 - SM_b20467 0.82 +0.5 481,212 - SM_b20467 0.82 -0.5 481,212 - SM_b20467 0.82 +0.4 481,214 - SM_b20467 0.82 -0.3 481,214 - SM_b20467 0.82 -0.3 481,263 + SM_b20467 0.85 +1.0 481,263 + SM_b20467 0.85 -0.4 481,263 + SM_b20467 0.85 -0.5 481,263 + SM_b20467 0.85 +1.2 481,263 + SM_b20467 0.85 -0.2 481,264 - SM_b20467 0.85 +1.6 481,264 - SM_b20467 0.85 +0.5 481,269 - SM_b20467 0.85 +0.6 481,346 + SM_b20467 0.89 +0.5 481,346 + SM_b20467 0.89 +1.3 481,346 + SM_b20467 0.89 -0.3 481,484 + -2.1 481,573 + +0.6 481,702 + SM_b20468 0.26 +0.6 481,702 + SM_b20468 0.26 -0.6 481,703 - SM_b20468 0.26 -1.0 481,703 - SM_b20468 0.26 +0.4 481,703 - SM_b20468 0.26 -1.0 481,703 - SM_b20468 0.26 -1.2 481,733 + SM_b20468 0.31 -0.1 481,819 + SM_b20468 0.44 +0.6 481,908 + SM_b20468 0.58 +0.4 481,909 - SM_b20468 0.58 +1.5 481,928 - SM_b20468 0.61 +0.0 482,107 - SM_b20468 0.89 -0.8 482,107 - SM_b20468 0.89 +0.6 482,148 - -1.2 482,319 + SM_b20469 0.10 -0.2 482,319 + SM_b20469 0.10 -0.2 482,319 + SM_b20469 0.10 -0.0 482,320 - SM_b20469 0.10 -0.3 482,320 - SM_b20469 0.10 -1.4 482,320 - SM_b20469 0.10 +0.6 482,329 + SM_b20469 0.11 -0.6 482,330 - SM_b20469 0.11 -0.1 482,330 - SM_b20469 0.11 +1.9 482,330 - SM_b20469 0.11 +1.7 482,475 + SM_b20469 0.25 -0.7 482,475 + SM_b20469 0.25 -0.3 482,475 + SM_b20469 0.25 -0.0 482,476 - SM_b20469 0.25 +0.3 482,476 - SM_b20469 0.25 +0.0 482,485 + SM_b20469 0.26 +1.5 482,485 + SM_b20469 0.26 +3.3 482,485 + SM_b20469 0.26 -0.5 482,671 + SM_b20469 0.43 +0.2 482,671 + SM_b20469 0.43 +0.9 482,733 + SM_b20469 0.49 -0.5 482,733 + SM_b20469 0.49 +0.2 482,733 + SM_b20469 0.49 +2.0 482,733 + SM_b20469 0.49 +0.4 482,734 - SM_b20469 0.49 -1.1 482,776 + SM_b20469 0.53 -1.2 482,776 + SM_b20469 0.53 -0.5 482,777 - SM_b20469 0.53 +0.1 483,025 - SM_b20469 0.76 -0.7 483,026 + SM_b20469 0.76 -0.6 483,026 + SM_b20469 0.76 -0.8 483,026 + SM_b20469 0.76 +1.3 483,027 - SM_b20469 0.76 -0.4 483,027 - SM_b20469 0.76 +0.1 483,027 - SM_b20469 0.76 -0.4 483,027 - SM_b20469 0.76 -0.7 483,040 + SM_b20469 0.77 -0.5 483,064 + SM_b20469 0.79 +1.2 483,064 + SM_b20469 0.79 -0.4 483,065 - SM_b20469 0.79 -0.7 483,066 + +0.5 483,331 + +1.8 483,332 - -0.1 483,372 - +1.4 483,387 - +0.5 483,393 - +1.2 483,393 - -0.0 483,414 + -0.2 483,453 + +0.3 483,454 - +0.4 483,468 + -0.4 483,479 + -0.4 483,479 + -0.4 483,480 - +0.4 483,509 + -1.1 483,546 + +0.5 483,546 + -0.3 483,626 + +0.4 483,709 + -0.2 483,823 - +1.2 483,823 - -0.2 483,852 + -0.5 484,023 + SM_b20470 0.16 -0.5 484,024 - SM_b20470 0.16 +0.7 484,047 + SM_b20470 0.21 -0.1 484,083 - SM_b20470 0.30 +0.5 484,193 + SM_b20470 0.55 -0.8 484,193 + SM_b20470 0.55 -0.1 484,194 - SM_b20470 0.55 +0.3 484,194 - SM_b20470 0.55 +0.2 484,194 - SM_b20470 0.55 -0.5 484,198 - SM_b20470 0.56 -1.2 484,198 - SM_b20470 0.56 +0.3 484,198 - SM_b20470 0.56 +0.1 484,198 - SM_b20470 0.56 +0.3 484,198 - SM_b20470 0.56 +0.0 484,237 + SM_b20470 0.65 -0.4 484,238 - SM_b20470 0.66 +0.0 484,238 - SM_b20470 0.66 -0.3 484,257 + SM_b20470 0.70 +0.5
Or see this region's nucleotide sequence